RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 PRKAR2AP13861 404 aaKnown RBP26.84■■□□□ 1.89
SHMT1-210ENST00000583780 PPP4CP60510 307 aa26.84■■□□□ 1.89
SHMT1-210ENST00000583780 HERVK_113P62684 666 aa26.84■■□□□ 1.89
SHMT1-210ENST00000583780 FOXP4Q8IVH2 680 aaPredicted RBP26.84■■□□□ 1.89
SHMT1-210ENST00000583780 GPRC5AQ8NFJ5 357 aa26.84■■□□□ 1.89
SHMT1-210ENST00000583780 NUDT12Q9BQG2 462 aa26.84■■□□□ 1.89
SHMT1-210ENST00000583780 AATFQ9NY61 560 aaKnown RBP eCLIP26.84■■□□□ 1.89
SHMT1-210ENST00000583780 PNMA6EA0A0J9YXQ4 647 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 C19orf81C9J6K1 198 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 ASNSP08243 561 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 COL6A1P12109 1028 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 IRX3P78415 501 aaPredicted RBP26.83■■□□□ 1.89
SHMT1-210ENST00000583780 CACNB2Q08289 660 aaPredicted RBP26.83■■□□□ 1.89
SHMT1-210ENST00000583780 Q7L0L9 218 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 DEFB123Q8N688 67 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 TMOD4Q9NZQ9 345 aa26.83■■□□□ 1.89
SHMT1-210ENST00000583780 FOCADQ5VW36 1801 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 UQCRFS1P1P0C7P4 283 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 LHX8Q68G74 356 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 ADGRA1Q86SQ6 560 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 TGFBRAP1Q8WUH2 860 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 CUL9Q8IWT3 2517 aa26.82■■□□□ 1.88
SHMT1-210ENST00000583780 USP17L10C9JJH3 530 aa26.81■■□□□ 1.88
SHMT1-210ENST00000583780 MAPKAPK5Q8IW41 473 aa26.81■■□□□ 1.88
SHMT1-210ENST00000583780 TDHQ8IZJ6 230 aa26.81■■□□□ 1.88
SHMT1-210ENST00000583780 PORCNQ9H237 461 aa26.81■■□□□ 1.88
SHMT1-210ENST00000583780 SNRKQ9NRH2 765 aa26.81■■□□□ 1.88
SHMT1-210ENST00000583780 G3BP1Q13283 466 aaKnown RBP eCLIP26.8■■□□□ 1.88
SHMT1-210ENST00000583780 CCL14Q16627 93 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 MORN1Q5T089 497 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 NAA16Q6N069 864 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-210ENST00000583780 EMILIN3Q9NT22 766 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 MTMR10Q9NXD2 777 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 PALD1Q9ULE6 856 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 TNNQ9UQP3 1299 aa26.8■■□□□ 1.88
SHMT1-210ENST00000583780 BAG3O95817 575 aa26.79■■□□□ 1.88
SHMT1-210ENST00000583780 CCND3P30281 292 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-210ENST00000583780 ERVK-9P63128 1117 aa26.79■■□□□ 1.88
SHMT1-210ENST00000583780 ERVK-24P63145 666 aa26.79■■□□□ 1.88
SHMT1-210ENST00000583780 SOCS4Q8WXH5 440 aa26.79■■□□□ 1.88
SHMT1-210ENST00000583780 GDF11O95390 407 aa26.78■■□□□ 1.88
SHMT1-210ENST00000583780 CYP2E1P05181 493 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-210ENST00000583780 MAPK4P31152 587 aa26.78■■□□□ 1.88
SHMT1-210ENST00000583780 GPR142Q7Z601 462 aa26.78■■□□□ 1.88
SHMT1-210ENST00000583780 NOL10Q9BSC4 688 aaKnown RBP26.78■■□□□ 1.88
SHMT1-210ENST00000583780 GINM1Q9NU53 330 aa26.78■■□□□ 1.88
SHMT1-210ENST00000583780 FLT1P17948 1338 aa26.78■■□□□ 1.88
SHMT1-210ENST00000583780 CCER2I3L3R5 266 aa26.77■■□□□ 1.88
SHMT1-210ENST00000583780 GNAI2P04899 355 aa26.77■■□□□ 1.88
SHMT1-210ENST00000583780 PLCG2P16885 1265 aa26.77■■□□□ 1.88
SHMT1-210ENST00000583780 TRMT44Q8IYL2 757 aaKnown RBP26.77■■□□□ 1.88
SHMT1-210ENST00000583780 UBE2OQ9C0C9 1292 aaKnown RBP26.77■■□□□ 1.88
SHMT1-210ENST00000583780 ZBTB21Q9ULJ3 1066 aa26.77■■□□□ 1.88
SHMT1-210ENST00000583780 STXBP5LQ9Y2K9 1186 aa26.77■■□□□ 1.88
SHMT1-210ENST00000583780 LRRC26Q2I0M4 334 aa26.76■■□□□ 1.87
SHMT1-210ENST00000583780 ZKSCAN1P17029 563 aaPredicted RBP26.75■■□□□ 1.87
SHMT1-210ENST00000583780 PLEKHH3Q7Z736 793 aa26.75■■□□□ 1.87
SHMT1-210ENST00000583780 DBNDD2Q9BQY9 259 aa26.75■■□□□ 1.87
SHMT1-210ENST00000583780 GPR108Q9NPR9 543 aa26.75■■□□□ 1.87
SHMT1-210ENST00000583780 DNAH12Q6ZR08 3092 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 CNMDO75829 334 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 TRIM27P14373 513 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 RGS2P41220 211 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 PDE3AQ14432 1141 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 TNNI3KQ59H18 835 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 CRACR2BQ8N4Y2 399 aaPredicted RBP26.74■■□□□ 1.87
SHMT1-210ENST00000583780 PAGR1Q9BTK6 254 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 FPGT-TNNI3KV9GXZ4 949 aa26.74■■□□□ 1.87
SHMT1-210ENST00000583780 MYH1P12882 1939 aa26.73■■□□□ 1.87
SHMT1-210ENST00000583780 DYNLL1P63167 89 aaKnown RBP26.73■■□□□ 1.87
SHMT1-210ENST00000583780 USP17L2Q6R6M4 530 aa26.73■■□□□ 1.87
SHMT1-210ENST00000583780 SAP30BPQ9UHR5 308 aaKnown RBP26.73■■□□□ 1.87
SHMT1-210ENST00000583780 FRMPD3Q5JV73 1810 aa26.73■■□□□ 1.87
SHMT1-210ENST00000583780 MAST2Q6P0Q8 1798 aa26.73■■□□□ 1.87
SHMT1-210ENST00000583780 POLA2Q14181 598 aa26.72■■□□□ 1.87
SHMT1-210ENST00000583780 TTC39AQ5SRH9 613 aa26.72■■□□□ 1.87
SHMT1-210ENST00000583780 ZNF512BQ96KM6 892 aaPredicted RBP26.72■■□□□ 1.87
SHMT1-210ENST00000583780 PIH1D3Q9NQM4 214 aaKnown RBP26.72■■□□□ 1.87
SHMT1-210ENST00000583780 FLRT1Q9NZU1 646 aa26.72■■□□□ 1.87
SHMT1-210ENST00000583780 ZAP70P43403 619 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 MAP2K5Q13163 448 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 CCDC158Q5M9N0 1113 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 TATDN1Q6P1N9 297 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 MIER1Q8N108 512 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 GTF3C2Q8WUA4 911 aaPredicted RBP26.71■■□□□ 1.87
SHMT1-210ENST00000583780 EDC3Q96F86 508 aaKnown RBP26.71■■□□□ 1.87
SHMT1-210ENST00000583780 C12orf42Q96LP6 360 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 RABGAP1Q9Y3P9 1069 aa26.71■■□□□ 1.87
SHMT1-210ENST00000583780 GH2P01242 217 aa26.7■■□□□ 1.86
SHMT1-210ENST00000583780 MDM2Q00987 491 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-210ENST00000583780 CCAR1Q8IX12 1150 aaKnown RBP26.7■■□□□ 1.86
SHMT1-210ENST00000583780 APBA2Q99767 749 aa26.7■■□□□ 1.86
SHMT1-210ENST00000583780 TRIM34Q9BYJ4 488 aa26.7■■□□□ 1.86
SHMT1-210ENST00000583780 POTEB2H3BUK9 544 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 IGSF3O75054 1194 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 BCAR3O75815 825 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 ATF7IPQ6VMQ6 1270 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 CATSPERGQ6ZRH7 1159 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 NDUFB9Q9Y6M9 179 aa26.69■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L15C9J2P7 530 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms