RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 PTPDC1A2A3K4 754 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 GOLGA6L3A6NEY3 463 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 RASSF10A6NK89 507 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 USP17L12C9JPN9 530 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 USP17L21D6R901 530 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 SH2B2O14492 632 aaPredicted RBP10.83□□□□□ -0.68
SS18-220ENST00000582092 MYO1BO43795 1136 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 LIFRP42702 1097 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 FOSBP53539 338 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 AKAP17AQ02040 695 aaKnown RBP10.83□□□□□ -0.68
SS18-220ENST00000582092 GNL2Q13823 731 aaKnown RBP10.83□□□□□ -0.68
SS18-220ENST00000582092 KLHL40Q2TBA0 621 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 CCDC178Q5BJE1 867 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 CYB5R4Q7L1T6 521 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 ADGRA1Q86SQ6 560 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 USP48Q86UV5 1035 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 C2orf69Q8N8R5 385 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 WASF1Q92558 559 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 NCOA5Q9HCD5 579 aaKnown RBP10.83□□□□□ -0.68
SS18-220ENST00000582092 LMBRD1Q9NUN5 540 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 MCM9Q9NXL9 1143 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 GGA3Q9NZ52 723 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 ZSWIM5Q9P217 1185 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 MTMR6Q9Y217 621 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 SUGT1Q9Y2Z0 365 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 NEDD4P46934 1319 aa10.83□□□□□ -0.68
SS18-220ENST00000582092 TRAF5O00463 557 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 JAK2O60674 1132 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 NF2P35240 595 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 NT5C2P49902 561 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 EVCP57679 992 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 ANTXR2P58335 489 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 SSRP1Q08945 709 aaKnown RBP10.82□□□□□ -0.68
SS18-220ENST00000582092 DLGAP5Q15398 846 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 CTR9Q6PD62 1173 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 CATIPQ7Z7H3 387 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 KIAA0825Q8IV33 1275 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 TRIM22Q8IYM9 498 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 ZNF444Q8N0Y2 327 aaPredicted RBP10.82□□□□□ -0.68
SS18-220ENST00000582092 HHIPL1Q96JK4 782 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 ZNF396Q96N95 335 aaPredicted RBP10.82□□□□□ -0.68
SS18-220ENST00000582092 BEGAINQ9BUH8 593 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 SCAND2PQ9GZW5 306 aaPredicted RBP10.82□□□□□ -0.68
SS18-220ENST00000582092 MKNK2Q9HBH9 465 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 ORC3Q9UBD5 711 aaPredicted RBP10.82□□□□□ -0.68
SS18-220ENST00000582092 CFAP45Q9UL16 551 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 TLL2Q9Y6L7 1015 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 MROH7-TTC4A0A0A0MT08 1334 aa10.82□□□□□ -0.68
SS18-220ENST00000582092 ZNF646O15015 1829 aaPredicted RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 LAMA4Q16363 1823 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 COL1A1P02452 1464 aaPredicted RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 TSPY2A6NKD2 308 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 CALM1P0DP23 149 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 CALM2P0DP24 149 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 CALM3P0DP25 149 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 BTDP43251 543 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 PPP4CP60510 307 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 PPP2R5BQ15173 497 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 TPRNQ4KMQ1 711 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 SBK1Q52WX2 424 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 IFIT1BQ5T764 474 aaKnown RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 ANGEL2Q5VTE6 544 aaKnown RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 FERMT3Q86UX7 667 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 MICU3Q86XE3 530 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 APOBEC3FQ8IUX4 373 aaKnown RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 TEX11Q8IYF3 940 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 NSUN7Q8NE18 718 aaKnown RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 SMARCC2Q8TAQ2 1214 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 IGDCC4Q8TDY8 1250 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 TGFBRAP1Q8WUH2 860 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 NUP133Q8WUM0 1156 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 C8orf76Q96K31 380 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 ZKSCAN3Q9BRR0 538 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 DCP1AQ9NPI6 582 aaPredicted RBP10.81□□□□□ -0.68
SS18-220ENST00000582092 BRPF3Q9ULD4 1205 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 CNPY2Q9Y2B0 182 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 FAM205AQ6ZU69 1335 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 IRS2Q9Y4H2 1338 aa10.81□□□□□ -0.68
SS18-220ENST00000582092 F8W031 263 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 FIBPO43427 364 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 VEGFBP49765 207 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 RBM5P52756 815 aaKnown RBP eCLIP10.8□□□□□ -0.68
SS18-220ENST00000582092 MAP2K1Q02750 393 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 ST3GAL1Q11201 340 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 COL9A3Q14050 684 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 DIXDC1Q155Q3 683 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 RTN1Q16799 776 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 CST9Q5W186 159 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 CAVIN1Q6NZI2 390 aaKnown RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 APOA5Q6Q788 366 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 SGMS1Q86VZ5 419 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 RAB11FIP4Q86YS3 637 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 SH3RF3Q8TEJ3 882 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 ANP32BQ92688 251 aaKnown RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 ZSCAN10Q96SZ4 725 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 NBPF3Q9H094 633 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 LY9Q9HBG7 655 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 GBA2Q9HCG7 927 aaPredicted RBP10.8□□□□□ -0.68
SS18-220ENST00000582092 INCENPQ9NQS7 918 aa10.8□□□□□ -0.68
SS18-220ENST00000582092 GPHNQ9NQX3 736 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 548 ms