RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 DEFB118Q96PH6 123 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 CRISPLD2Q9H0B8 497 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 MORF4L1Q9UBU8 362 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 DBNLQ9UJU6 430 aaKnown RBP12.98□□□□□ -0.33
RFFL-209ENST00000581265 PALD1Q9ULE6 856 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 ZMYND8Q9ULU4 1186 aaPredicted RBP12.98□□□□□ -0.33
RFFL-209ENST00000581265 FLT1P17948 1338 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 ZAP70P43403 619 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 NECAB2Q7Z6G3 386 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 MAPKAPK5Q8IW41 473 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 EAF2Q96CJ1 260 aaPredicted RBP12.97□□□□□ -0.33
RFFL-209ENST00000581265 PAWRQ96IZ0 340 aaKnown RBP12.97□□□□□ -0.33
RFFL-209ENST00000581265 GDF15Q99988 308 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 DNAJC18Q9H819 358 aa12.97□□□□□ -0.33
RFFL-209ENST00000581265 PIH1D3Q9NQM4 214 aaKnown RBP12.97□□□□□ -0.33
RFFL-209ENST00000581265 RLBP1P12271 317 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 MTMR2Q13614 643 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 LRIT3Q3SXY7 679 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 CERS3Q8IU89 383 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 FTSJ3Q8IY81 847 aaKnown RBP12.96□□□□□ -0.33
RFFL-209ENST00000581265 CRACR2BQ8N4Y2 399 aaPredicted RBP12.96□□□□□ -0.33
RFFL-209ENST00000581265 P2RX7Q99572 595 aaKnown RBP12.96□□□□□ -0.33
RFFL-209ENST00000581265 C1orf115Q9H7X2 142 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 PRDM6Q9NQX0 595 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 TMOD4Q9NZQ9 345 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 TAOK2Q9UL54 1235 aa12.96□□□□□ -0.33
RFFL-209ENST00000581265 USP17L10C9JJH3 530 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 HMGCRP04035 888 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 CYP7A1P22680 504 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 IRX3P78415 501 aaPredicted RBP12.95□□□□□ -0.34
RFFL-209ENST00000581265 TMED8Q6PL24 325 aaPredicted RBP12.95□□□□□ -0.34
RFFL-209ENST00000581265 ITPRIPQ8IWB1 547 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 TDHQ8IZJ6 230 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 TRIM34Q9BYJ4 488 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 UBE2OQ9C0C9 1292 aaKnown RBP12.95□□□□□ -0.34
RFFL-209ENST00000581265 CCDC8Q9H0W5 538 aaPredicted RBP12.95□□□□□ -0.34
RFFL-209ENST00000581265 ZBTB21Q9ULJ3 1066 aa12.95□□□□□ -0.34
RFFL-209ENST00000581265 LOC285556D6RIA3 1793 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 RPTORQ8N122 1335 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 IDH1O75874 414 aaKnown RBP12.94□□□□□ -0.34
RFFL-209ENST00000581265 HLA-DOAP06340 250 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 SYN1P17600 705 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
RFFL-209ENST00000581265 HNRNPUQ00839 825 aaKnown RBP eCLIP12.94□□□□□ -0.34
RFFL-209ENST00000581265 GPRC5AQ8NFJ5 357 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.94□□□□□ -0.347e-8■■■■■ 32.9
RFFL-209ENST00000581265 EMILIN3Q9NT22 766 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 TLR7Q9NYK1 1049 aaKnown RBP12.94□□□□□ -0.34
RFFL-209ENST00000581265 RBPJLQ9UBG7 517 aa12.94□□□□□ -0.34
RFFL-209ENST00000581265 SAP30BPQ9UHR5 308 aaKnown RBP12.94□□□□□ -0.34
RFFL-209ENST00000581265 GDF11O95390 407 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 XRCC5P13010 732 aaKnown RBP12.93□□□□□ -0.34
RFFL-209ENST00000581265 HERVK_113P62684 666 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 SHROOM1Q2M3G4 852 aaPredicted RBP12.93□□□□□ -0.34
RFFL-209ENST00000581265 TATDN1Q6P1N9 297 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 CEP85Q6P2H3 762 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 ANKLE1Q8NAG6 615 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 TXNRD2Q9NNW7 524 aa12.93□□□□□ -0.34
RFFL-209ENST00000581265 HMX1Q9NP08 348 aaPredicted RBP12.93□□□□□ -0.34
RFFL-209ENST00000581265 SIPA1L1O43166 1804 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 ATAD5Q96QE3 1844 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 MAGEA10P43363 369 aaPredicted RBP12.92□□□□□ -0.34
RFFL-209ENST00000581265 MAP3K12Q12852 859 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 Q3C1V9 767 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 ERC1Q8IUD2 1116 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 MAGEB6Q8N7X4 407 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 MIGA1Q8NAN2 632 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 GTF3C2Q8WUA4 911 aaPredicted RBP12.92□□□□□ -0.34
RFFL-209ENST00000581265 NUDT12Q9BQG2 462 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 EHD4Q9H223 541 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 ANTXR1Q9H6X2 564 aa12.92□□□□□ -0.34
RFFL-209ENST00000581265 RANBP2P49792 3224 aaKnown RBP12.91□□□□□ -0.34
RFFL-209ENST00000581265 PEX10O60683 326 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 GH2P01242 217 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 CYP2B6P20813 491 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 MAPK4P31152 587 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 USP5P45974 858 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 TRIM32Q13049 653 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 MAP3K21Q5TCX8 1036 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 USP17L2Q6R6M4 530 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 POTEEQ6S8J3 1075 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 TTC6Q86TZ1 520 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 SOCS4Q8WXH5 440 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 TRIB2Q92519 343 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 USP6NLQ92738 828 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 C12orf42Q96LP6 360 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 SERPINB13Q9UIV8 391 aa12.91□□□□□ -0.34
RFFL-209ENST00000581265 MYO5AQ9Y4I1 1855 aaKnown RBP12.91□□□□□ -0.34
RFFL-209ENST00000581265 MAST2Q6P0Q8 1798 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 ERVK-9P63128 1117 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 ERVK-24P63145 666 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 HSP90AB4PQ58FF6 505 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 AACSQ86V21 672 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 TRMT44Q8IYL2 757 aaKnown RBP12.9□□□□□ -0.34
RFFL-209ENST00000581265 MIER1Q8N108 512 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 DIS3LQ8TF46 1054 aaKnown RBP12.9□□□□□ -0.34
RFFL-209ENST00000581265 FAM161BQ96MY7 647 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 NBPF3Q9H094 633 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 KIAA1683Q9H0B3 1180 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 OGDHLQ9ULD0 1010 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms