RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ITGB7P26010 798 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 TNNI2P48788 182 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 CYP27A1Q02318 531 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 CLCQ05315 142 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 TMEM201Q5SNT2 666 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 DUSP27Q5VZP5 1158 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 SLC6A19Q695T7 634 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 OGFOD3Q6PK18 319 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 REXO1Q8N1G1 1221 aaKnown RBP7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 TOP6BLQ8N6T0 577 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 ACSF2Q96CM8 615 aaPredicted RBP7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 GPRASP2Q96D09 838 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 TMEM87BQ96K49 555 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 REV1Q9UBZ9 1251 aa7.43□□□□□ -1.22
SMCHD1-204ENST00000581226 LEFTY1O75610 366 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 CST3P01034 146 aaPredicted RBP7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 CAP2P40123 477 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 MLECQ14165 292 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 LCE3BQ5TA77 95 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 PRAMEF13Q5VWM6 474 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 ZDHHC13Q8IUH4 622 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 MRPL41Q8IXM3 137 aaKnown RBP7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 MFSD2AQ8NA29 543 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 FAM13CQ8NE31 585 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 XAGE3Q8WTP9 111 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 SPATA32Q96LK8 384 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 DPH2Q9BQC3 489 aaPredicted RBP7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 DUSP23Q9BVJ7 150 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 EHMT1Q9H9B1 1298 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 PRDM10Q9NQV6 1147 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 KLHL3Q9UH77 587 aa7.42□□□□□ -1.22
SMCHD1-204ENST00000581226 UPK3BL1B0FP48 263 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 UPK3BL2E5RIL1 263 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 ATE1O95260 518 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 GJA8P48165 433 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 CYP27C1Q4G0S4 372 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 ZNF765Q7L2R6 523 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 METTL22Q9BUU2 404 aaPredicted RBP7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 CAPN10Q9HC96 672 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 EFR3BQ9Y2G0 817 aa7.41□□□□□ -1.22
SMCHD1-204ENST00000581226 CHURC1-FNTBB4DL54 471 aa7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 YARSP54577 528 aaKnown RBP7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 RASGRP4Q8TDF6 673 aa7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 MIPEPQ99797 713 aa7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 GINM1Q9NU53 330 aa7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 LEMD3Q9Y2U8 911 aa7.4□□□□□ -1.22
SMCHD1-204ENST00000581226 PRR19A6NJB7 356 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 SLITRK5O94991 958 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 GNL2Q13823 731 aaKnown RBP7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 COL9A2Q14055 689 aaPredicted RBP7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 ZMYM1Q5SVZ6 1142 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 FBXW10Q5XX13 1052 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 FERD3LQ96RJ6 166 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 LRRC4CQ9HCJ2 640 aa7.39□□□□□ -1.23
SMCHD1-204ENST00000581226 SLC22A31A6NKX4 558 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 DNAJA2O60884 412 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 TGFB1P01137 390 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 CPSF6Q16630 551 aaKnown RBP eCLIP7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 LETMD1Q6P1Q0 360 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 VPS37DQ86XT2 251 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 RIN3Q8TB24 985 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 GMIPQ9P107 970 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 PIM2Q9P1W9 311 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 PPT2Q9UMR5 302 aa7.38□□□□□ -1.23
SMCHD1-204ENST00000581226 CYP26A1O43174 497 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 IMPDH2P12268 514 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 SOX9P48436 509 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 LRRFIP1Q32MZ4 808 aaKnown RBP7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 ARSHQ5FYA8 562 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 SLFN12Q8IYM2 578 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 PHACTR4Q8IZ21 702 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 GTF2IRD1Q9UHL9 959 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 TPX2Q9ULW0 747 aaKnown RBP7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 RNF112Q9ULX5 631 aa7.37□□□□□ -1.23
SMCHD1-204ENST00000581226 EOMESO95936 686 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 NASPP49321 788 aaPredicted RBP7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 OVOS1Q6IE37 1185 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 CCDC81Q6ZN84 652 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 CYB5D2Q8WUJ1 264 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 SEC16BQ96JE7 1060 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 ANTXR1Q9H6X2 564 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 ZNRF3Q9ULT6 936 aa7.36□□□□□ -1.23
SMCHD1-204ENST00000581226 SCO2A0A1W2PP80 73 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 FOSL1P15407 271 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 RAG1P15918 1043 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 GRIK1P39086 918 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 ZC3H6P61129 1189 aaKnown RBP7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 ZNF746Q6NUN9 644 aaPredicted RBP7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 ARHGAP27Q6ZUM4 889 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 FAM214BQ7L5A3 538 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 CDH24Q86UP0 819 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 CPLX3Q8WVH0 158 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 TMEM40Q8WWA1 233 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 ATG4CQ96DT6 458 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 CCDC74BQ96LY2 380 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 HEXIM2Q96MH2 286 aaKnown RBP7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 CRBNQ96SW2 442 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 KIF2CQ99661 725 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 TINF2Q9BSI4 451 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 PRDM5Q9NQX1 630 aaPredicted RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms