RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PRKAB2O43741 272 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 TATDN1Q6P1N9 297 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 C17orf99Q6UX52 265 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 WDR18Q9BV38 432 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 PUS7LQ9H0K6 701 aaKnown RBP28.79■■■□□ 2.2
SHMT1-206ENST00000579558 RWDD1Q9H446 243 aaPredicted RBP28.79■■■□□ 2.2
SHMT1-206ENST00000579558 ATP8A2Q9NTI2 1148 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 AGTPBP1Q9UPW5 1226 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 SLC45A1Q9Y2W3 748 aa28.79■■■□□ 2.2
SHMT1-206ENST00000579558 CYP2C8P10632 490 aa28.78■■■□□ 2.2
SHMT1-206ENST00000579558 CAP1Q01518 475 aa28.78■■■□□ 2.2
SHMT1-206ENST00000579558 ARHGEF6Q15052 776 aa28.78■■■□□ 2.2
SHMT1-206ENST00000579558 PROCA1Q8NCQ7 364 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-206ENST00000579558 LOC285556D6RIA3 1793 aa28.78■■■□□ 2.2
SHMT1-206ENST00000579558 HMGCS2P54868 508 aa28.77■■■□□ 2.2
SHMT1-206ENST00000579558 KIF22Q14807 665 aa28.77■■■□□ 2.2
SHMT1-206ENST00000579558 SALL3Q9BXA9 1300 aa28.76■■■□□ 2.19
SHMT1-206ENST00000579558 RNF113AO15541 343 aaKnown RBP28.76■■■□□ 2.19
SHMT1-206ENST00000579558 GH2P01242 217 aa28.76■■■□□ 2.19
SHMT1-206ENST00000579558 LACTBP83111 547 aaPredicted RBP28.76■■■□□ 2.19
SHMT1-206ENST00000579558 CERKLQ49MI3 558 aaPredicted RBP28.76■■■□□ 2.19
SHMT1-206ENST00000579558 TREML2Q5T2D2 321 aa28.76■■■□□ 2.19
SHMT1-206ENST00000579558 SLC4A4Q9Y6R1 1079 aa28.76■■■□□ 2.19
SHMT1-206ENST00000579558 BAZ2AQ9UIF9 1905 aaKnown RBP28.76■■■□□ 2.19
SHMT1-206ENST00000579558 ZFYP08048 801 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-206ENST00000579558 CYP2D6P10635 497 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 SHMT1P34896 483 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 EVX2Q03828 476 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 GABPAQ06546 454 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 MTMR2Q13614 643 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 LRRFIP1Q32MZ4 808 aaKnown RBP28.75■■■□□ 2.19
SHMT1-206ENST00000579558 SH3D19Q5HYK7 790 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 APPBP2Q92624 585 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 DDRGK1Q96HY6 314 aa28.75■■■□□ 2.19
SHMT1-206ENST00000579558 BACE1P56817 501 aa28.74■■■□□ 2.19
SHMT1-206ENST00000579558 ABCB5Q2M3G0 1257 aa28.74■■■□□ 2.19
SHMT1-206ENST00000579558 ARHGAP39Q9C0H5 1083 aa28.74■■■□□ 2.19
SHMT1-206ENST00000579558 PTPN22Q9Y2R2 807 aa28.74■■■□□ 2.19
SHMT1-206ENST00000579558 ZSWIM8A7E2V4 1837 aa28.73■■■□□ 2.19
SHMT1-206ENST00000579558 AMOTL1Q8IY63 956 aa28.73■■■□□ 2.19
SHMT1-206ENST00000579558 SMCR8Q8TEV9 937 aaPredicted RBP28.73■■■□□ 2.19
SHMT1-206ENST00000579558 OSBP2Q969R2 916 aa28.73■■■□□ 2.19
SHMT1-206ENST00000579558 TMOD4Q9NZQ9 345 aa28.73■■■□□ 2.19
SHMT1-206ENST00000579558 PNMA3Q9UL41 463 aa28.73■■■□□ 2.19
SHMT1-206ENST00000579558 USP17L10C9JJH3 530 aa28.72■■■□□ 2.19
SHMT1-206ENST00000579558 ECM2O94769 699 aaPredicted RBP28.72■■■□□ 2.19
SHMT1-206ENST00000579558 BCRP11274 1271 aa28.72■■■□□ 2.19
SHMT1-206ENST00000579558 PABPC4Q13310 644 aaKnown RBP eCLIP28.72■■■□□ 2.19
SHMT1-206ENST00000579558 SMC5Q8IY18 1101 aa28.72■■■□□ 2.19
SHMT1-206ENST00000579558 STRBPQ96SI9 672 aaKnown RBP28.72■■■□□ 2.19
SHMT1-206ENST00000579558 FSD1Q9BTV5 496 aa28.72■■■□□ 2.19
SHMT1-206ENST00000579558 CABP5Q9NP86 173 aa28.72■■■□□ 2.19
SHMT1-206ENST00000579558 C19orf81C9J6K1 198 aa28.71■■■□□ 2.19
SHMT1-206ENST00000579558 IGHDP01880 384 aa28.71■■■□□ 2.19
SHMT1-206ENST00000579558 RAB3GAP1Q15042 981 aa28.71■■■□□ 2.19
SHMT1-206ENST00000579558 LNPKQ9C0E8 428 aa28.71■■■□□ 2.19
SHMT1-206ENST00000579558 STAP2Q9UGK3 403 aa28.71■■■□□ 2.19
SHMT1-206ENST00000579558 USP17L12C9JPN9 530 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 USP17L21D6R901 530 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 PDE1AP54750 535 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 B4GALNT3Q6L9W6 998 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 DYNLL2Q96FJ2 89 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 SWAP70Q9UH65 585 aa28.7■■■□□ 2.18
SHMT1-206ENST00000579558 CYP2D7A0A087X1C5 515 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 OSBPP22059 807 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 C12orf60Q5U649 245 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 SLC44A5Q8NCS7 719 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 TAOK2Q9UL54 1235 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 MYH8P13535 1937 aa28.69■■■□□ 2.18
SHMT1-206ENST00000579558 GPAA1O43292 621 aa28.68■■■□□ 2.18
SHMT1-206ENST00000579558 GNRH1P01148 92 aa28.68■■■□□ 2.18
SHMT1-206ENST00000579558 PSMC4P43686 418 aa28.68■■■□□ 2.18
SHMT1-206ENST00000579558 FEZ1Q99689 392 aa28.68■■■□□ 2.18
SHMT1-206ENST00000579558 M0R2C6 588 aa28.67■■■□□ 2.18
SHMT1-206ENST00000579558 MPHOSPH10O00566 681 aaKnown RBP28.67■■■□□ 2.18
SHMT1-206ENST00000579558 CTGFP29279 349 aa28.67■■■□□ 2.18
SHMT1-206ENST00000579558 SOX10P56693 466 aa28.67■■■□□ 2.18
SHMT1-206ENST00000579558 IRX6P78412 446 aaPredicted RBP28.67■■■□□ 2.18
SHMT1-206ENST00000579558 CTR9Q6PD62 1173 aa28.67■■■□□ 2.18
SHMT1-206ENST00000579558 USP17L2Q6R6M4 530 aa28.67■■■□□ 2.18
SHMT1-206ENST00000579558 ASCC2Q9H1I8 757 aaPredicted RBP28.67■■■□□ 2.18
SHMT1-206ENST00000579558 FMNL1O95466 1100 aaPredicted RBP28.66■■■□□ 2.18
SHMT1-206ENST00000579558 RGS19P49795 217 aa28.66■■■□□ 2.18
SHMT1-206ENST00000579558 TRIM47Q96LD4 638 aa28.66■■■□□ 2.18
SHMT1-206ENST00000579558 ARPP21Q9UBL0 812 aaPredicted RBP28.66■■■□□ 2.18
SHMT1-206ENST00000579558 PTCH2Q9Y6C5 1203 aa28.66■■■□□ 2.18
SHMT1-206ENST00000579558 GSG1L2A8MUP6 293 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 SMIM22K7EJ46 135 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 GNAT2P19087 354 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 GUCY1A2P33402 732 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 IRX3P78415 501 aaPredicted RBP28.65■■■□□ 2.18
SHMT1-206ENST00000579558 SEPT2Q15019 361 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 ZYXQ15942 572 aaKnown RBP28.65■■■□□ 2.18
SHMT1-206ENST00000579558 CHD1LQ86WJ1 897 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 ANKRD13CQ8N6S4 541 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 EMILIN3Q9NT22 766 aa28.65■■■□□ 2.18
SHMT1-206ENST00000579558 CDK8P49336 464 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 FCGRTP55899 365 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 NUCB1Q02818 461 aa28.64■■■□□ 2.18
SHMT1-206ENST00000579558 GIMAP6Q6P9H5 292 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms