RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 THNSL2Q86YJ6 484 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 PTPRHQ9HD43 1115 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 CHL1O00533 1208 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 MORC3Q14149 939 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 PDXDC2PQ6P474 469 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 DRC7Q8IY82 874 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 CHPFQ8IZ52 775 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 IFNL2Q8IZJ0 200 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 TSPYL6Q8N831 410 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 JMYQ8N9B5 988 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 MYRIPQ8NFW9 859 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 PIGBQ92521 554 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 PPCSQ9HAB8 311 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 CDV3Q9UKY7 258 aaKnown RBP8.35□□□□□ -1.07
VPS53-217ENST00000575100 PLAAQ9Y263 795 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 ARFGEF1Q9Y6D6 1849 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 N4BP2Q86UW6 1770 aaPredicted RBP8.34□□□□□ -1.07
VPS53-217ENST00000575100 KCNQ3O43525 872 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 STAT3P40763 770 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 TRAPPC10P48553 1259 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 RAB27AP51159 221 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 TCEA2Q15560 299 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 C2orf27AQ580R0 203 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 L1TD1Q5T7N2 865 aaKnown RBP8.34□□□□□ -1.07
VPS53-217ENST00000575100 CELF2-AS1Q8N7Q2 184 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 C8orf58Q8NAV2 365 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 AS3MTQ9HBK9 375 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 GINM1Q9NU53 330 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 VIRMAQ69YN4 1812 aaKnown RBP8.34□□□□□ -1.07
VPS53-217ENST00000575100 C4AP0C0L4 1744 aa8.34□□□□□ -1.07
VPS53-217ENST00000575100 ELL2O00472 640 aaPredicted RBP8.33□□□□□ -1.08
VPS53-217ENST00000575100 OPLAHO14841 1288 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 GNAI1P63096 354 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 ERAP2Q6P179 960 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 KIAA0825Q8IV33 1275 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 TEX19Q8NA77 164 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 LINC00116Q8NCU8 138 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 KBTBD4Q9NVX7 518 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 TAGLN3Q9UI15 199 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 RCAN3Q9UKA8 241 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 PXDNLA1KZ92 1463 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 SCN11AQ9UI33 1791 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 LOC102724428A0A0B4J2F2 783 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 BCAR3O75815 825 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 HSPA6P17066 643 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 SIK1P57059 783 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 IFRD2Q12894 506 aaPredicted RBP8.33□□□□□ -1.08
VPS53-217ENST00000575100 ADAM32Q8TC27 787 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 ZIM2Q9NZV7 527 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 PPP2R3BQ9Y5P8 575 aa8.33□□□□□ -1.08
VPS53-217ENST00000575100 UTRNP46939 3433 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 SIPA1L3O60292 1781 aaPredicted RBP8.32□□□□□ -1.08
VPS53-217ENST00000575100 C10orf71Q711Q0 1435 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 ZRANB2O95218 330 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS53-217ENST00000575100 ATN1P54259 1190 aaPredicted RBP8.32□□□□□ -1.08
VPS53-217ENST00000575100 CALD1Q05682 793 aaKnown RBP8.32□□□□□ -1.08
VPS53-217ENST00000575100 RASGRF1Q13972 1273 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 TAF7Q15545 349 aaPredicted RBP8.32□□□□□ -1.08
VPS53-217ENST00000575100 KSR2Q6VAB6 950 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 PODNQ7Z5L7 613 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 SPICE1Q8N0Z3 855 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 DCAF5Q96JK2 942 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 OSBPL7Q9BZF2 842 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 TSPYL4Q9UJ04 414 aa8.32□□□□□ -1.08
VPS53-217ENST00000575100 MYH14Q7Z406 1995 aaKnown RBP8.32□□□□□ -1.08
VPS53-217ENST00000575100 EIF1AYO14602 144 aaKnown RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 ZBTB39O15060 712 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 AKAP10O43572 662 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 VDRP11473 427 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ATP6V1AP38606 617 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 TEFQ10587 303 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ORC1Q13415 861 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 SLC39A6Q13433 755 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ITPK1Q13572 414 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 TM4SF20Q53R12 229 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 SYNPOQ8N3V7 929 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 CHAC2Q8WUX2 184 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 SLC52A2Q9HAB3 445 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 TMOD3Q9NYL9 352 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ADAMTS1Q9UHI8 967 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 POLIQ9UNA4 740 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 MRC1P22897 1456 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 KDM3BQ7LBC6 1761 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 TMEM238LA0A1B0GVL6 79 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 BTBD11A6QL63 1104 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 SMAPO00193 183 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 TCERG1O14776 1098 aaKnown RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 PDPK1O15530 556 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 VAMP4O75379 141 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 RARSP54136 660 aaKnown RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 COX20Q5RI15 118 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ZKSCAN2Q63HK3 967 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 ATCAYQ86WG3 371 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 CDC5LQ99459 802 aaKnown RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 RSPH9Q9H1X1 276 aaPredicted RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 PDZRN3Q9UPQ7 1066 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 R3HCC1Q9Y3T6 440 aaKnown RBP8.31□□□□□ -1.08
VPS53-217ENST00000575100 RNF123Q5XPI4 1314 aa8.31□□□□□ -1.08
VPS53-217ENST00000575100 PRAMEF22A3QJZ6 481 aa8.3□□□□□ -1.08
VPS53-217ENST00000575100 RASGRP1O95267 797 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms