RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 PAGR1Q9BTK6 254 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 SRCIN1Q9C0H9 1055 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 PORCNQ9H237 461 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 SALL1Q9NSC2 1324 aa16.32■□□□□ 0.2
CCDC40-208ENST00000572270 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-208ENST00000572270 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.31■□□□□ 0.2
CCDC40-208ENST00000572270 CAP2P40123 477 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 MTMR2Q13614 643 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 AKNAD1Q5T1N1 836 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 TIFAQ96CG3 184 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 KAZALD1Q96I82 304 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 DENND2AQ9ULE3 1009 aa16.31■□□□□ 0.2
CCDC40-208ENST00000572270 BTDP43251 543 aa16.3■□□□□ 0.2
CCDC40-208ENST00000572270 ATP2B2Q01814 1243 aa16.3■□□□□ 0.2
CCDC40-208ENST00000572270 RABL6Q3YEC7 729 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-208ENST00000572270 SH3RF1Q7Z6J0 888 aa16.3■□□□□ 0.2
CCDC40-208ENST00000572270 RBPJLQ9UBG7 517 aa16.3■□□□□ 0.2
CCDC40-208ENST00000572270 TRIM43BA6NCK2 446 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 MYCNP04198 464 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-208ENST00000572270 NBPF7P0C2Y1 421 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-208ENST00000572270 BACE1P56817 501 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 CCNA1P78396 465 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 SNX17Q15036 470 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 Q3C1V9 767 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 WDR78Q5VTH9 848 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 POTEEQ6S8J3 1075 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 KLHDC4Q8TBB5 520 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 TRIM43Q96BQ3 446 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-208ENST00000572270 FLRT1Q9NZU1 646 aa16.29■□□□□ 0.2
CCDC40-208ENST00000572270 SEMA3EO15041 775 aa16.28■□□□□ 0.2
CCDC40-208ENST00000572270 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
CCDC40-208ENST00000572270 WDR18Q9BV38 432 aa16.28■□□□□ 0.2
CCDC40-208ENST00000572270 TSPYL2Q9H2G4 693 aaPredicted RBP16.28■□□□□ 0.2
CCDC40-208ENST00000572270 TACC3Q9Y6A5 838 aa16.28■□□□□ 0.2
CCDC40-208ENST00000572270 IVNS1ABPQ9Y6Y0 642 aa16.28■□□□□ 0.2
CCDC40-208ENST00000572270 NCOR1O75376 2440 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 BDP1A6H8Y1 2624 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 SLC15A5A6NIM6 579 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 C19orf81C9J6K1 198 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 VAMP4O75379 141 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 RAG1P15918 1043 aa16.27■□□□□ 0.2
CCDC40-208ENST00000572270 MROH7-TTC4A0A0A0MT08 1334 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 NPM3O75607 178 aaKnown RBP16.26■□□□□ 0.19
CCDC40-208ENST00000572270 CLTBP09497 229 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 CYP2C19P33261 490 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 FPGSQ05932 587 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 CCDC85BQ15834 202 aaPredicted RBP16.26■□□□□ 0.19
CCDC40-208ENST00000572270 C1orf53Q5VUE5 145 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 ANKRD44Q8N8A2 993 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 FAM163AQ96GL9 167 aaPredicted RBP16.26■□□□□ 0.19
CCDC40-208ENST00000572270 PRDM12Q9H4Q4 367 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 ABCF2Q9UG63 623 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 HERC5Q9UII4 1024 aaKnown RBP16.26■□□□□ 0.19
CCDC40-208ENST00000572270 NDUFB9Q9Y6M9 179 aa16.26■□□□□ 0.19
CCDC40-208ENST00000572270 IL16Q14005 1332 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 FANCIQ9NVI1 1328 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 USP17L10C9JJH3 530 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 ASNSP08243 561 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 CYBAP13498 195 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 PTPREP23469 700 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 ADCYAP1R1P41586 468 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 EPHB4P54760 987 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 TLE2Q04725 743 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 CCDC27Q2M243 656 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 CCDC129Q6ZRS4 1044 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 FERMT2Q96AC1 680 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 LRFN3Q9BTN0 628 aa16.25■□□□□ 0.19
CCDC40-208ENST00000572270 TCF20Q9UGU0 1960 aaKnown RBP16.24■□□□□ 0.19
CCDC40-208ENST00000572270 EYA2O00167 538 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 HOXC6P09630 235 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 IGFBP4P22692 258 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 RRP1BQ14684 758 aaKnown RBP16.24■□□□□ 0.19
CCDC40-208ENST00000572270 ATP2B3Q16720 1220 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 ANO1Q5XXA6 986 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 SPTY2D1Q68D10 685 aaPredicted RBP16.24■□□□□ 0.19
CCDC40-208ENST00000572270 WWC1Q8IX03 1113 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 TRPV1Q8NER1 839 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 NECAB3Q96P71 396 aaPredicted RBP16.24■□□□□ 0.19
CCDC40-208ENST00000572270 RABGAP1Q9Y3P9 1069 aa16.24■□□□□ 0.19
CCDC40-208ENST00000572270 PLXNA1Q9UIW2 1896 aa16.23■□□□□ 0.19
CCDC40-208ENST00000572270 ITGB8P26012 769 aa16.23■□□□□ 0.19
CCDC40-208ENST00000572270 PHKA1P46020 1223 aa16.23■□□□□ 0.19
CCDC40-208ENST00000572270 TMEM31Q5JXX7 168 aa16.23■□□□□ 0.19
CCDC40-208ENST00000572270 NPLOC4Q8TAT6 608 aa16.23■□□□□ 0.19
CCDC40-208ENST00000572270 GPR75-ASB3A0A0A6YYF3 556 aa16.22■□□□□ 0.19
CCDC40-208ENST00000572270 SEPT4O43236 478 aa16.22■□□□□ 0.19
CCDC40-208ENST00000572270 MAP4K4O95819 1239 aaPredicted RBP16.22■□□□□ 0.19
CCDC40-208ENST00000572270 RHBDL3P58872 404 aa16.22■□□□□ 0.19
CCDC40-208ENST00000572270 GRB14Q14449 540 aa16.22■□□□□ 0.19
CCDC40-208ENST00000572270 AAK1Q2M2I8 961 aa16.22■□□□□ 0.19
CCDC40-208ENST00000572270 ALYREFQ86V81 257 aaKnown RBP16.22■□□□□ 0.19
CCDC40-208ENST00000572270 CXXC1Q9P0U4 656 aaPredicted RBP16.22■□□□□ 0.19
CCDC40-208ENST00000572270 XIRP2A4UGR9 3374 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 KIAA0355O15063 1070 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 EXOSC9Q06265 439 aaKnown RBP16.21■□□□□ 0.19
CCDC40-208ENST00000572270 LRRC41Q15345 812 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 CCDC174Q6PII3 467 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 USP17L2Q6R6M4 530 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 DPP9Q86TI2 863 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 TRIM34Q9BYJ4 488 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms