RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CTSHP09668 335 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 ITPKAP23677 461 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 AFF1P51825 1210 aaKnown RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 PTPN12Q05209 780 aaKnown RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 TAF1CQ15572 869 aaPredicted RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 PTPROQ16827 1216 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 ZNF385CQ66K41 422 aaPredicted RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 C8orf86Q6ZUL3 223 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 SLC43A3Q8NBI5 491 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 KCNB2Q92953 911 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 GPATCH3Q96I76 525 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 ADAM19Q9H013 955 aa8.04□□□□□ -1.12
VPS53-212ENST00000572259 SH2B1Q9NRF2 756 aaPredicted RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 MAGEC2Q9UBF1 373 aaPredicted RBP8.04□□□□□ -1.12
VPS53-212ENST00000572259 CENPJQ9HC77 1338 aaPredicted RBP8.03□□□□□ -1.12
VPS53-212ENST00000572259 RGPD8O14715 1765 aaPredicted RBP8.03□□□□□ -1.12
VPS53-212ENST00000572259 IBSPP21815 317 aaPredicted RBP8.03□□□□□ -1.12
VPS53-212ENST00000572259 CDC25BP30305 580 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 FAM117BQ6P1L5 589 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 KRT28Q7Z3Y7 464 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 WFDC8Q8IUA0 241 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 C3orf58Q8NDZ4 430 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 NGDNQ8NEJ9 315 aaKnown RBP8.03□□□□□ -1.12
VPS53-212ENST00000572259 CARD11Q9BXL7 1154 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 BRINP2Q9C0B6 783 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 MUC3BQ9H195 1237 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 PPM1HQ9ULR3 514 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 FMN2Q9NZ56 1722 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 COL16A1Q07092 1604 aaPredicted RBP8.03□□□□□ -1.12
VPS53-212ENST00000572259 NHSL1Q5SYE7 1610 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 ANKARQ7Z5J8 1434 aa8.03□□□□□ -1.12
VPS53-212ENST00000572259 MED1Q15648 1581 aaPredicted RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 GPRASP1Q5JY77 1395 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 WIPF1O43516 503 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 GRIK5Q16478 980 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 RPS26P11Q5JNZ5 115 aaPredicted RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 MEI1Q5TIA1 1274 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 MORC4Q8TE76 937 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 DDX17Q92841 729 aaKnown RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 TINF2Q9BSI4 451 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 CDK19Q9BWU1 502 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 CLEC4MQ9H2X3 399 aaPredicted RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 ZNF576Q9H609 170 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 KLHL42Q9P2K6 505 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 GPN3Q9UHW5 284 aaPredicted RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 SOX13Q9UN79 622 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 ARHGEF28Q8N1W1 1705 aaKnown RBP8.02□□□□□ -1.13
VPS53-212ENST00000572259 EVC2Q86UK5 1308 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 KIF1AQ12756 1690 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 SHPRHQ149N8 1683 aa8.02□□□□□ -1.13
VPS53-212ENST00000572259 USP31Q70CQ4 1352 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 ATP2B1P20020 1258 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 ST13P50502 369 aaKnown RBP8.01□□□□□ -1.13
VPS53-212ENST00000572259 RAD51AP2Q09MP3 1159 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 IKBKEQ14164 716 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 CCDC144BQ3MJ40 725 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 MSL1Q68DK7 614 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 ZNF772Q68DY9 489 aaPredicted RBP8.01□□□□□ -1.13
VPS53-212ENST00000572259 PMFBP1Q8TBY8 1022 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 DDX54Q8TDD1 881 aaKnown RBP8.01□□□□□ -1.13
VPS53-212ENST00000572259 CEP44Q9C0F1 390 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 PRDM6Q9NQX0 595 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 PRKAG2Q9UGJ0 569 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 ADGRB2O60241 1585 aa8.01□□□□□ -1.13
VPS53-212ENST00000572259 TRPM1Q7Z4N2 1603 aa8□□□□□ -1.13
VPS53-212ENST00000572259 H3BRJ5 948 aa8□□□□□ -1.13
VPS53-212ENST00000572259 LINC01387J3KSC0 135 aa8□□□□□ -1.13
VPS53-212ENST00000572259 ZNF76P36508 570 aa8□□□□□ -1.13
VPS53-212ENST00000572259 ARL4DP49703 201 aa8□□□□□ -1.13
VPS53-212ENST00000572259 PPP2R3AQ06190 1150 aa8□□□□□ -1.13
VPS53-212ENST00000572259 PCDH1Q08174 1060 aa8□□□□□ -1.13
VPS53-212ENST00000572259 CCDC85BQ15834 202 aaPredicted RBP8□□□□□ -1.13
VPS53-212ENST00000572259 NBPF8Q3BBV2 869 aa8□□□□□ -1.13
VPS53-212ENST00000572259 TRAPPC3LQ5T215 181 aa8□□□□□ -1.13
VPS53-212ENST00000572259 ADAMTSL4Q6UY14 1074 aa8□□□□□ -1.13
VPS53-212ENST00000572259 TPTE2Q6XPS3 522 aa8□□□□□ -1.13
VPS53-212ENST00000572259 VN1R5Q7Z5H4 357 aa8□□□□□ -1.13
VPS53-212ENST00000572259 RNF34Q969K3 372 aa8□□□□□ -1.13
VPS53-212ENST00000572259 STK17AQ9UEE5 414 aa8□□□□□ -1.13
VPS53-212ENST00000572259 TULP4Q9NRJ4 1543 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 PIK3R2O00459 728 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 FBXO24O75426 580 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 EPHA1P21709 976 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 ZNF157P51786 506 aaPredicted RBP7.99□□□□□ -1.13
VPS53-212ENST00000572259 ANAPC15P60006 121 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 ITSN1Q15811 1721 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 LDLRAD1Q5T700 205 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 DMRTC2Q8IXT2 367 aaPredicted RBP7.99□□□□□ -1.13
VPS53-212ENST00000572259 ZSCAN1Q8NBB4 408 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 ZCRB1Q8TBF4 217 aaKnown RBP7.99□□□□□ -1.13
VPS53-212ENST00000572259 SLC7A3Q8WY07 619 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 DHX38Q92620 1227 aaKnown RBP7.99□□□□□ -1.13
VPS53-212ENST00000572259 SEC31BQ9NQW1 1179 aa7.99□□□□□ -1.13
VPS53-212ENST00000572259 METTL5Q9NRN9 209 aaKnown RBP7.99□□□□□ -1.13
VPS53-212ENST00000572259 ARHGEF10O15013 1369 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 PNPLA6Q8IY17 1366 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 ARHGEF15O94989 841 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 ESRRAP11474 423 aaPredicted RBP7.98□□□□□ -1.13
VPS53-212ENST00000572259 DGKGP49619 791 aa7.98□□□□□ -1.13
VPS53-212ENST00000572259 SUZ12Q15022 739 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms