RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 A0A1W2PQD8 194 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 MRPL12P52815 198 aaKnown RBP17.19■□□□□ 0.34
CIITA-204ENST00000570546 CMTR1Q8N1G2 835 aaKnown RBP17.19■□□□□ 0.34
CIITA-204ENST00000570546 ARFGAP2Q8N6H7 521 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 RGS22Q8NE09 1264 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 ABCC3O15438 1527 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 RIMBP2O15034 1052 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 NONOQ15233 471 aaKnown RBP eCLIP17.19■□□□□ 0.34
CIITA-204ENST00000570546 C8orf74Q6P047 294 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 OTUD6BQ8N6M0 293 aa17.19■□□□□ 0.34
CIITA-204ENST00000570546 PDE6AP16499 860 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 OAS2P29728 719 aaKnown RBP17.18■□□□□ 0.34
CIITA-204ENST00000570546 KRT25Q7Z3Z0 450 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 C10orf67Q8IYJ2 551 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 PI4K2BQ8TCG2 481 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 ZNF215Q9UL58 517 aaPredicted RBP17.18■□□□□ 0.34
CIITA-204ENST00000570546 NSUN7Q8NE18 718 aaKnown RBP17.18■□□□□ 0.34
CIITA-204ENST00000570546 VWA3BQ502W6 1294 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 CCDC51Q96ER9 411 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 CLIC6Q96NY7 704 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 PPP2R2CQ9Y2T4 447 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 NLRP1Q9C000 1473 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 MED23Q9ULK4 1368 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 TTC31Q49AM3 519 aaPredicted RBP17.18■□□□□ 0.34
CIITA-204ENST00000570546 GPR161Q8N6U8 529 aaKnown RBP17.18■□□□□ 0.34
CIITA-204ENST00000570546 TFCP2L1Q9NZI6 479 aa17.18■□□□□ 0.34
CIITA-204ENST00000570546 GNPATO15228 680 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 EPB41P11171 864 aaKnown RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 GTF2A1P52655 376 aaPredicted RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 ANKS4BQ8N8V4 417 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 ERBB4Q15303 1308 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 CDC42BPBQ9Y5S2 1711 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 CARMIL3Q8ND23 1372 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 ERCC6LQ2NKX8 1250 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 ZBTB38Q8NAP3 1195 aaPredicted RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 FANCLQ9NW38 375 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 PRAMEF22A3QJZ6 481 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 CABP7Q86V35 215 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 FBXO18Q8NFZ0 1043 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 IPO4Q8TEX9 1081 aaKnown RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 NOX5Q96PH1 765 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 CCDC77Q9BR77 488 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 GPR108Q9NPR9 543 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 PLS1Q14651 629 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 ASIC2Q16515 512 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 FAM47AQ5JRC9 791 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 MSL1Q68DK7 614 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 UBLCP1Q8WVY7 318 aaPredicted RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 ZSCAN10Q96SZ4 725 aaPredicted RBP17.17■□□□□ 0.34
CIITA-204ENST00000570546 LRWD1Q9UFC0 647 aa17.17■□□□□ 0.34
CIITA-204ENST00000570546 PCCAP05165 728 aaPredicted RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 C11orf57Q6ZUT1 292 aaPredicted RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 PAIP2Q9BPZ3 127 aaKnown RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 DESI2Q9BSY9 194 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 GLI2P10070 1586 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 M0R2C6 588 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 ARID4AP29374 1257 aaPredicted RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 RBM17Q96I25 401 aaKnown RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 SMIM23A6NLE4 172 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 CIAO1O76071 339 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 UFL1O94874 794 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 TRIML1Q8N9V2 468 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 FANCBQ8NB91 859 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 LZTS2Q9BRK4 669 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 IKBKGQ9Y6K9 419 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 EIF6P56537 245 aaKnown RBP17.16■□□□□ 0.34
CIITA-204ENST00000570546 RASSF4Q9H2L5 321 aa17.16■□□□□ 0.34
CIITA-204ENST00000570546 ZNF827Q17R98 1081 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 CCDC26Q8TAB7 109 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 WDR66Q8TBY9 1149 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 CDCA7Q9BWT1 371 aaPredicted RBP17.15■□□□□ 0.34
CIITA-204ENST00000570546 HDAC9Q9UKV0 1011 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 ADCY7P51828 1080 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 UTP14CQ5TAP6 766 aaKnown RBP17.15■□□□□ 0.34
CIITA-204ENST00000570546 WDR78Q5VTH9 848 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 PUS3Q9BZE2 481 aaKnown RBP17.15■□□□□ 0.34
CIITA-204ENST00000570546 KCNJ18B7U540 433 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 ADORA1P30542 326 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 GJC1P36383 396 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 ETF1P62495 437 aaKnown RBP17.15■□□□□ 0.34
CIITA-204ENST00000570546 KCNJ12Q14500 433 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 NBPF14Q5TI25 921 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 CPLX4Q7Z7G2 160 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 FMNL3Q8IVF7 1028 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 SNX29Q8TEQ0 813 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 MTRF1LQ9UGC7 380 aaKnown RBP17.15■□□□□ 0.34
CIITA-204ENST00000570546 ACTN2P35609 894 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 DYMQ7RTS9 669 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 C8orf37Q96NL8 207 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 FRMD4BQ9Y2L6 1034 aa17.15■□□□□ 0.34
CIITA-204ENST00000570546 PSDA5PKW4 1024 aaPredicted RBP17.14■□□□□ 0.33
CIITA-204ENST00000570546 BTBD18B2RXH4 712 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 MORC3Q14149 939 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 GSTA5Q7RTV2 222 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 MAST3O60307 1309 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 TLDC2A0PJX2 215 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 GOLGA6CA6NDK9 693 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 GOLGA6DP0CG33 693 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 TFAP4Q01664 338 aa17.14■□□□□ 0.33
CIITA-204ENST00000570546 SLC9C1Q4G0N8 1177 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms