RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GLRX3O76003 335 aaKnown RBP12.24□□□□□ -0.45
CLK3-226ENST00000569406 PDIA5Q14554 519 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 TDRD7Q8NHU6 1098 aaKnown RBP12.24□□□□□ -0.45
CLK3-226ENST00000569406 GOLGA1Q92805 767 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 FAM227BQ96M60 508 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 EHD4Q9H223 541 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 HOMER3Q9NSC5 361 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 FOSBP53539 338 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 BRD3Q15059 726 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 FILIP1LQ4L180 1135 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 MED23Q9ULK4 1368 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 CCDC40Q4G0X9 1142 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 AMOTL1Q8IY63 956 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 SYCP3Q8IZU3 236 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 OR8K1Q8NGG5 319 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 RABGGTAQ92696 567 aa12.24□□□□□ -0.45
CLK3-226ENST00000569406 SNRPA1P09661 255 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 SLC8A3P57103 927 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 DNM1Q05193 864 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 MPP3Q13368 585 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 IQCB1Q15051 598 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 EXOC8Q8IYI6 725 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 TMEM87AQ8NBN3 555 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 MKL1Q969V6 931 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 FAM163AQ96GL9 167 aaPredicted RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 LAMA4Q16363 1823 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 TXLNAP40222 546 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 PAPOLAP51003 745 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 NKX1-1Q15270 411 aaPredicted RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 FERMT3Q86UX7 667 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 CNTROBQ8N137 903 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 RBM17Q96I25 401 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 MYD88Q99836 296 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 ABCB6Q9NP58 842 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 WDR17Q8IZU2 1322 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 ITGB4P16144 1822 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 AK2P54819 239 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 ENOX2Q16206 610 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 C16orf87Q6PH81 154 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 LARP1Q6PKG0 1096 aaKnown RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 ANKRD13DQ6ZTN6 518 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 TMEM110Q86TL2 294 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 AACSQ86V21 672 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 C17orf50Q8WW18 174 aa12.23□□□□□ -0.45
CLK3-226ENST00000569406 CCDC8Q9H0W5 538 aaPredicted RBP12.23□□□□□ -0.45
CLK3-226ENST00000569406 A0A0D9SFI3 127 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 FNTAP49354 379 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 FOXO4P98177 505 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 CASP8Q14790 479 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 BEND6Q5SZJ8 279 aaPredicted RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 MICALCLQ6ZW33 695 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 CLASRPQ8N2M8 674 aaKnown RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 ZCRB1Q8TBF4 217 aaKnown RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 TBC1D31Q96DN5 1066 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 EDC3Q96F86 508 aaKnown RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 COPRSQ9NQ92 184 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 PAPOLBQ9NRJ5 636 aaKnown RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 DBNLQ9UJU6 430 aaKnown RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 CSB-PGBD3P0DP91 1061 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 SPTY2D1Q68D10 685 aaPredicted RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 TCP11Q8WWU5 503 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 ATP6V0A4Q9HBG4 840 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 SLC39A2Q9NP94 309 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 SUN2Q9UH99 717 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 PARP3Q9Y6F1 533 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 A0A1B0GVG6 124 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 SFPQP23246 707 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLK3-226ENST00000569406 ZNF589Q86UQ0 364 aaPredicted RBP12.22□□□□□ -0.45
CLK3-226ENST00000569406 KAT14Q9H8E8 782 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 TMOD4Q9NZQ9 345 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 MAPK8IP1Q9UQF2 711 aa12.22□□□□□ -0.45
CLK3-226ENST00000569406 PHLPP2Q6ZVD8 1323 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 RIC3Q7Z5B4 369 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 FAM114A1Q8IWE2 563 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 MAP4K1Q92918 833 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 SIL1Q9H173 461 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 DACT1Q9NYF0 836 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 ANKIB1Q9P2G1 1089 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 ATP6V1DQ9Y5K8 247 aa12.21□□□□□ -0.45
CLK3-226ENST00000569406 ZSCAN22P10073 491 aaPredicted RBP12.21□□□□□ -0.46
CLK3-226ENST00000569406 GNAT1P11488 350 aa12.21□□□□□ -0.46
CLK3-226ENST00000569406 CDC25BP30305 580 aa12.21□□□□□ -0.46
CLK3-226ENST00000569406 DZIP3Q86Y13 1208 aaKnown RBP12.21□□□□□ -0.46
CLK3-226ENST00000569406 PUF60Q9UHX1 559 aaKnown RBP12.21□□□□□ -0.46
CLK3-226ENST00000569406 EIF4E1BA6NMX2 242 aaKnown RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 M0R2C6 588 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 GNG11P61952 73 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 CWF19L1Q69YN2 538 aaKnown RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 TLDC1Q6P9B6 456 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 GBP3Q9H0R5 595 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 ZSWIM6Q9HCJ5 1215 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 PCDHGC5Q9Y5F6 944 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 NDUFAB1O14561 156 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 SMIM24O75264 130 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 RHOXF2BP0C7M4 288 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 ALDH1B1P30837 517 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 GSDMDP57764 484 aa12.2□□□□□ -0.46
CLK3-226ENST00000569406 PRPF4BQ13523 1007 aaKnown RBP12.2□□□□□ -0.46
CLK3-226ENST00000569406 TTLL7Q6ZT98 887 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms