RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, human

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-209	ENST00000569336	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.79	□□□□□ -0.52
CLN6-209	ENST00000569336	SLC4A4	Q9Y6R1	1079 aa		11.79	□□□□□ -0.52
CLN6-209	ENST00000569336	ZHX2	Q9Y6X8	837 aa		11.79	□□□□□ -0.52
CLN6-209	ENST00000569336		A0A0G2JLL6	359 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	USP17L5	A8MUK1	530 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	TBC1D8	O95759	1140 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	CRHR2	Q13324	411 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	GIMAP6	Q6P9H5	292 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	ANKRD23	Q86SG2	305 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	PUS7L	Q9H0K6	701 aa	Known RBP	11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	OSBPL3	Q9H4L5	887 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	DNAJC18	Q9H819	358 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	ZFYVE28	Q9HCC9	887 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	SWAP70	Q9UH65	585 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	ZBTB21	Q9ULJ3	1066 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	AFG3L2	Q9Y4W6	797 aa		11.78	□□□□□ -0.52
CLN6-209	ENST00000569336	TRIM75P	A6NK02	468 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	BTBD19	C9JJ37	291 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	GPR25	O00155	361 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	GPAA1	O43292	621 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	FKTN	O75072	461 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	TATDN1	Q6P1N9	297 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	FAM43A	Q8N2R8	423 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	ZNF280C	Q8ND82	737 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	PARK7	Q99497	189 aa	Known RBP	11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	PTPN18	Q99952	460 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	ROBO3	Q96MS0	1386 aa		11.77	□□□□□ -0.53
CLN6-209	ENST00000569336	TRIM6-TRIM34	B2RNG4	842 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	GDF11	O95390	407 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	SLURP2	P0DP57	97 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	PLCD1	P51178	756 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	SLFNL1	Q499Z3	407 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	CERKL	Q49MI3	558 aa	Predicted RBP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	GADL1	Q6ZQY3	521 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	OSBP2	Q969R2	916 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	ERO1A	Q96HE7	468 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	STRBP	Q96SI9	672 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	WDR18	Q9BV38	432 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	NACAP1	Q9BZK3	213 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	CABP5	Q9NP86	173 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	PNMA3	Q9UL41	463 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	SLC45A1	Q9Y2W3	748 aa		11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	KIAA0100	Q14667	2235 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-209	ENST00000569336	PDHX	O00330	501 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	PRKAB2	O43741	272 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	CHGB	P05060	677 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	NEFL	P07196	543 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	SHMT1	P34896	483 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	TDO2	P48775	406 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	GABPA	Q06546	454 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	SPP2	Q13103	211 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	ARHGEF6	Q15052	776 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	ABCB5	Q2M3G0	1257 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	ZMYM1	Q5SVZ6	1142 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	CTU1	Q7Z7A3	348 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	PLEKHM2	Q8IWE5	1019 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	AGTPBP1	Q9UPW5	1226 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	PDE4DIP	Q5VU43	2346 aa		11.75	□□□□□ -0.53
CLN6-209	ENST00000569336	TNRC18	O15417	2968 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	C19orf81	C9J6K1	198 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	USP17L12	C9JPN9	530 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	USP17L21	D6R901	530 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336		M0R2C6	588 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	HIP1	O00291	1037 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	TLR2	O60603	784 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	GH2	P01242	217 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	APP	P05067	770 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	MFAP1	P55081	439 aa	Known RBP	11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	SP3	Q02447	781 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	MOGS	Q13724	837 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	RRP1B	Q14684	758 aa	Known RBP	11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	PKN2	Q16513	984 aa	Known RBP	11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	SBK1	Q52WX2	424 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	C12orf60	Q5U649	245 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	RILPL2	Q969X0	211 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	FEZ1	Q99689	392 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	ZNF287	Q9HBT7	754 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	HELLS	Q9NRZ9	838 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	TMOD4	Q9NZQ9	345 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	FRMPD3	Q5JV73	1810 aa		11.74	□□□□□ -0.53
CLN6-209	ENST00000569336	GSG1L2	A8MUP6	293 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	PATL2	C9JE40	543 aa	Known RBP	11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	USP17L10	C9JJH3	530 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	MPHOSPH10	O00566	681 aa	Known RBP	11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	BRCA2	P51587	3418 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	USP14	P54578	494 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	HMGCS2	P54868	508 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	BACE1	P56817	501 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	MTMR2	Q13614	643 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	KIF22	Q14807	665 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	RAB3GAP1	Q15042	981 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	SH3D19	Q5HYK7	790 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	CTR9	Q6PD62	1173 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	TMEM179	Q6ZVK1	233 aa		11.73	□□□□□ -0.53
CLN6-209	ENST00000569336	C16orf86	Q6ZW13	317 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms