RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GOLIM4O00461 696 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 IDH1O75874 414 aaKnown RBP16.9■□□□□ 0.3
CLN3-235ENST00000568497 BTDP43251 543 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 DYNLL1P63167 89 aaKnown RBP16.9■□□□□ 0.3
CLN3-235ENST00000568497 FAM109BQ6ICB4 259 aaPredicted RBP16.9■□□□□ 0.3
CLN3-235ENST00000568497 ANKRD13CQ8N6S4 541 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 MAFAQ8NHW3 353 aaPredicted RBP16.9■□□□□ 0.3
CLN3-235ENST00000568497 FAM151AQ8WW52 585 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 NSUN4Q96CB9 384 aaKnown RBP16.9■□□□□ 0.3
CLN3-235ENST00000568497 USP40Q9NVE5 1235 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 SUGT1Q9Y2Z0 365 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 DOCK3Q8IZD9 2030 aa16.9■□□□□ 0.3
CLN3-235ENST00000568497 PICALMQ13492 652 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 HHIPL2Q6UWX4 724 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 PICK1Q9NRD5 415 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 SLC45A1Q9Y2W3 748 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 ZHX2Q9Y6X8 837 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 MAST3O60307 1309 aa16.89■□□□□ 0.29
CLN3-235ENST00000568497 A0A0G2JLL6 359 aaPredicted RBP16.88■□□□□ 0.29
CLN3-235ENST00000568497 PRRT2Q7Z6L0 340 aaPredicted RBP16.88■□□□□ 0.29
CLN3-235ENST00000568497 MIGA1Q8NAN2 632 aa16.88■□□□□ 0.29
CLN3-235ENST00000568497 LNPKQ9C0E8 428 aa16.88■□□□□ 0.29
CLN3-235ENST00000568497 DDX4Q9NQI0 724 aaKnown RBP16.88■□□□□ 0.29
CLN3-235ENST00000568497 FAM198AQ9UFP1 575 aa16.88■□□□□ 0.29
CLN3-235ENST00000568497 TRIM32Q13049 653 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 HDAC1Q13547 482 aaPredicted RBP16.87■□□□□ 0.29
CLN3-235ENST00000568497 SKAP1Q86WV1 359 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 MAGEB6Q8N7X4 407 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 SH3RF3Q8TEJ3 882 aaPredicted RBP16.87■□□□□ 0.29
CLN3-235ENST00000568497 SYMPKQ92797 1274 aaKnown RBP16.87■□□□□ 0.29
CLN3-235ENST00000568497 AATFQ9NY61 560 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLN3-235ENST00000568497 MROH7-TTC4A0A0A0MT08 1334 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 GAKO14976 1311 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 PFASO15067 1338 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 PDS5AQ29RF7 1337 aaKnown RBP16.87■□□□□ 0.29
CLN3-235ENST00000568497 EYSQ5T1H1 3165 aa16.87■□□□□ 0.29
CLN3-235ENST00000568497 SPTBN5Q9NRC6 3674 aaKnown RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 CYP7A1P22680 504 aa16.86■□□□□ 0.29
CLN3-235ENST00000568497 SPTY2D1Q68D10 685 aaPredicted RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 NAA16Q6N069 864 aaPredicted RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 ZGPATQ8N5A5 531 aaKnown RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 ZNF512BQ96KM6 892 aaPredicted RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 CDX2Q99626 313 aaPredicted RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 LBHD1Q9BQE6 289 aaPredicted RBP16.86■□□□□ 0.29
CLN3-235ENST00000568497 RGS3P49796 1198 aa16.85■□□□□ 0.29
CLN3-235ENST00000568497 RHBDL3P58872 404 aa16.85■□□□□ 0.29
CLN3-235ENST00000568497 SH3BP5LQ7L8J4 393 aa16.85■□□□□ 0.29
CLN3-235ENST00000568497 SCYL3Q8IZE3 742 aa16.85■□□□□ 0.29
CLN3-235ENST00000568497 OGDHLQ9ULD0 1010 aa16.85■□□□□ 0.29
CLN3-235ENST00000568497 TRIM75PA6NK02 468 aa16.84■□□□□ 0.29
CLN3-235ENST00000568497 FAM196BA6NMK8 535 aa16.84■□□□□ 0.29
CLN3-235ENST00000568497 FAM110CQ1W6H9 321 aa16.84■□□□□ 0.29
CLN3-235ENST00000568497 RAPGEFL1Q9UHV5 662 aa16.84■□□□□ 0.29
CLN3-235ENST00000568497 TTC28Q96AY4 2481 aa16.84■□□□□ 0.29
CLN3-235ENST00000568497 GPR75-ASB3A0A0A6YYF3 556 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 COL2A1P02458 1487 aaPredicted RBP16.83■□□□□ 0.28
CLN3-235ENST00000568497 PTPRFP10586 1907 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 PTPRAP18433 802 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 ATP5JP18859 108 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 EVX2Q03828 476 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 LRRC26Q2I0M4 334 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 ECHDC1Q9NTX5 307 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 PNMA3Q9UL41 463 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 AFG3L2Q9Y4W6 797 aa16.83■□□□□ 0.28
CLN3-235ENST00000568497 PHF20L1A8MW92 1017 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 PRKAR2AP13861 404 aaKnown RBP16.82■□□□□ 0.28
CLN3-235ENST00000568497 PDE6AP16499 860 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 MAPKAPK5Q8IW41 473 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 MYLIPQ8WY64 445 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 HAUS7Q99871 368 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 RWDD1Q9H446 243 aaPredicted RBP16.82■□□□□ 0.28
CLN3-235ENST00000568497 PAG1Q9NWQ8 432 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 SAP30BPQ9UHR5 308 aaKnown RBP16.82■□□□□ 0.28
CLN3-235ENST00000568497 AGTPBP1Q9UPW5 1226 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 DOCK2Q92608 1830 aa16.82■□□□□ 0.28
CLN3-235ENST00000568497 ZNF532Q9HCE3 1301 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 DDTLA6NHG4 134 aaPredicted RBP16.81■□□□□ 0.28
CLN3-235ENST00000568497 FOSL2P15408 326 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 TEX11Q8IYF3 940 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 PI4K2BQ8TCG2 481 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 TRIB2Q92519 343 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.81■□□□□ 0.28
CLN3-235ENST00000568497 MAST2Q6P0Q8 1798 aa16.81■□□□□ 0.28
CLN3-235ENST00000568497 RFX7Q2KHR2 1363 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 ATRNL1Q5VV63 1379 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 SALL3Q9BXA9 1300 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 PRUNE2Q8WUY3 3088 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 ZBTB22O15209 634 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 CYP2B6P20813 491 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 GSTO1P78417 241 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 TREML2Q5T2D2 321 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 SLC9C2Q5TAH2 1124 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 ZSCAN29Q8IWY8 852 aaPredicted RBP16.8■□□□□ 0.28
CLN3-235ENST00000568497 SMC5Q8IY18 1101 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 TGFBRAP1Q8WUH2 860 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 FAM163AQ96GL9 167 aaPredicted RBP16.8■□□□□ 0.28
CLN3-235ENST00000568497 PRKAG2Q9UGJ0 569 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 GJD2Q9UKL4 321 aa16.8■□□□□ 0.28
CLN3-235ENST00000568497 TCRBV5S4A2TA0A5A2 114 aa16.79■□□□□ 0.28
CLN3-235ENST00000568497 SMIM22K7EJ46 135 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms