RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GAL3ST3Q96A11 431 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 LMCD1Q9NZU5 365 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 VTI1BQ9UEU0 232 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 USP31Q70CQ4 1352 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 KRTAP4-8A0A0G2JLE6 195 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 SLITRK5O94991 958 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 EOMESO95936 686 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 CHMP4BP1P59074 171 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 SLBPQ14493 270 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS35-207ENST00000568191 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.18□□□□□ -1.58
VPS35-207ENST00000568191 C22orf34Q6ZV56 151 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 FAM214BQ7L5A3 538 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 NPAS4Q8IUM7 802 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 SPACA3Q8IXA5 215 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 CRELD1Q96HD1 420 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 GZF1Q9H116 711 aaPredicted RBP5.18□□□□□ -1.58
VPS35-207ENST00000568191 ADAM30Q9UKF2 790 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 PCDHB5Q9Y5E4 795 aa5.18□□□□□ -1.58
VPS35-207ENST00000568191 BTBD11A6QL63 1104 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 GFRA2O00451 464 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 CBX7O95931 251 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 RNASE1P07998 156 aaKnown RBP5.17□□□□□ -1.58
VPS35-207ENST00000568191 AFMP43652 599 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 YARSP54577 528 aaKnown RBP5.17□□□□□ -1.58
VPS35-207ENST00000568191 MLECQ14165 292 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 NKPD1Q17RQ9 610 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 ZNF326Q5BKZ1 582 aaKnown RBP5.17□□□□□ -1.58
VPS35-207ENST00000568191 MEI1Q5TIA1 1274 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 CDKAL1Q5VV42 579 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 PRAMEF13Q5VWM6 474 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 UBE3DQ7Z6J8 389 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 MRPL41Q8IXM3 137 aaKnown RBP5.17□□□□□ -1.58
VPS35-207ENST00000568191 FBRSQ9HAH7 460 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 MBNL3Q9NUK0 354 aaKnown RBP5.17□□□□□ -1.58
VPS35-207ENST00000568191 FAM53CQ9NYF3 392 aa5.17□□□□□ -1.58
VPS35-207ENST00000568191 ZNF865P0CJ78 1059 aaPredicted RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 TFE3P19532 575 aaPredicted RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 GBP2P32456 591 aaPredicted RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 PKN1Q16512 942 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 NKG7Q16617 165 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 DNAJC14Q6Y2X3 702 aaPredicted RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 THAP5Q7Z6K1 395 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 MCATQ8IVS2 390 aaKnown RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 PIWIL2Q8TC59 973 aaKnown RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 XAGE3Q8WTP9 111 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 TMEM40Q8WWA1 233 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 SYTL4Q96C24 671 aaPredicted RBP5.16□□□□□ -1.58
VPS35-207ENST00000568191 TMEM87BQ96K49 555 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 HSPA12BQ96MM6 686 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 PITPNM2Q9BZ72 1349 aa5.16□□□□□ -1.58
VPS35-207ENST00000568191 PLCG1P19174 1290 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 CD96P40200 585 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 LMNB2Q03252 620 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 POU5F2Q8N7G0 328 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 LRRN4CLQ8ND94 238 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 PHC3Q8NDX5 983 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 FAM168AQ92567 244 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 SLC38A3Q99624 504 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 RSRP1Q9BUV0 290 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 TRIT1Q9H3H1 467 aaKnown RBP5.15□□□□□ -1.59
VPS35-207ENST00000568191 KCNH3Q9ULD8 1083 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 U3KQE9 123 aa5.15□□□□□ -1.59
VPS35-207ENST00000568191 H3BS24 57 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 FARP2O94887 1054 aaPredicted RBP5.14□□□□□ -1.59
VPS35-207ENST00000568191 PAPLNO95428 1278 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 RAC2P15153 192 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 CDK8P49336 464 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 CAMK2GQ13555 558 aaPredicted RBP5.14□□□□□ -1.59
VPS35-207ENST00000568191 KCNMB1Q16558 191 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 SNAP47Q5SQN1 464 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 OGFOD2Q6N063 350 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 TMPRSS7Q7RTY8 843 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 FBXO33Q7Z6M2 555 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 CDH24Q86UP0 819 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 FAM13CQ8NE31 585 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 FLAD1Q8NFF5 587 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 GATAD2BQ8WXI9 593 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 FAM161BQ96MY7 647 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 TMEM74Q96NL1 305 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 RNF19AQ9NV58 838 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 TJP2Q9UDY2 1190 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 CEP131Q9UPN4 1083 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 TLR6Q9Y2C9 796 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 CAPN6Q9Y6Q1 641 aa5.14□□□□□ -1.59
VPS35-207ENST00000568191 TNNI2P48788 182 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 ZSWIM9Q86XI8 627 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 WFDC3Q8IUB2 231 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 KSR1Q8IVT5 923 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 UBE2FQ969M7 185 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 BCL2L13Q9BXK5 485 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 CARS2Q9HA77 564 aaKnown RBP5.13□□□□□ -1.59
VPS35-207ENST00000568191 GPATCH2Q9NW75 528 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 ZSWIM5Q9P217 1185 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 ADAMTS6Q9UKP5 1117 aa5.13□□□□□ -1.59
VPS35-207ENST00000568191 ZBTB7CA1YPR0 619 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 CILPO75339 1184 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 PF4P02776 101 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 RIN3Q8TB24 985 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 CYB5D2Q8WUJ1 264 aa5.12□□□□□ -1.59
VPS35-207ENST00000568191 DPH2Q9BQC3 489 aaPredicted RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms