RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 SLC45A1Q9Y2W3 748 aa22.22■■□□□ 1.15
CLN3-221ENST00000566057 KIAA0100Q14667 2235 aaKnown RBP22.22■■□□□ 1.15
CLN3-221ENST00000566057 MYH8P13535 1937 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 DOCK3Q8IZD9 2030 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 PRKAB2O43741 272 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 MBD4O95243 580 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 BCRP11274 1271 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 UBE3CQ15386 1083 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 PROCA1Q8NCQ7 364 aaPredicted RBP22.21■■□□□ 1.15
CLN3-221ENST00000566057 AS3MTQ9HBK9 375 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 DCP1AQ9NPI6 582 aaPredicted RBP22.21■■□□□ 1.15
CLN3-221ENST00000566057 MCM9Q9NXL9 1143 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 ZBTB21Q9ULJ3 1066 aa22.21■■□□□ 1.15
CLN3-221ENST00000566057 POLR3DP05423 398 aaPredicted RBP22.2■■□□□ 1.14
CLN3-221ENST00000566057 KIF22Q14807 665 aa22.2■■□□□ 1.14
CLN3-221ENST00000566057 ARHGEF6Q15052 776 aa22.2■■□□□ 1.14
CLN3-221ENST00000566057 SH3D19Q5HYK7 790 aa22.2■■□□□ 1.14
CLN3-221ENST00000566057 GPATCH3Q96I76 525 aa22.2■■□□□ 1.14
CLN3-221ENST00000566057 GH2P01242 217 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 CYP2D6P10635 497 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 SHMT1P34896 483 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 BACE1P56817 501 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 TRIM47Q96LD4 638 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 PUS7LQ9H0K6 701 aaKnown RBP22.19■■□□□ 1.14
CLN3-221ENST00000566057 GINM1Q9NU53 330 aa22.19■■□□□ 1.14
CLN3-221ENST00000566057 PSMC4P43686 418 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 GABPAQ06546 454 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 MTMR2Q13614 643 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 ZSCAN25Q6NSZ9 544 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 KBTBD3Q8NAB2 608 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 PTCH2Q9Y6C5 1203 aa22.18■■□□□ 1.14
CLN3-221ENST00000566057 MLLT1Q03111 559 aaPredicted RBP22.17■■□□□ 1.14
CLN3-221ENST00000566057 HDAC1Q13547 482 aaPredicted RBP22.17■■□□□ 1.14
CLN3-221ENST00000566057 CERKLQ49MI3 558 aaPredicted RBP22.17■■□□□ 1.14
CLN3-221ENST00000566057 PI4K2BQ8TCG2 481 aa22.17■■□□□ 1.14
CLN3-221ENST00000566057 TTC41PQ6P2S7 1318 aa22.16■■□□□ 1.14
CLN3-221ENST00000566057 BRCA2P51587 3418 aa22.16■■□□□ 1.14
CLN3-221ENST00000566057 ANKRD45Q5TZF3 282 aa22.16■■□□□ 1.14
CLN3-221ENST00000566057 ATP8A2Q9NTI2 1148 aa22.16■■□□□ 1.14
CLN3-221ENST00000566057 USP17L10C9JJH3 530 aa22.15■■□□□ 1.14
CLN3-221ENST00000566057 SMIM22K7EJ46 135 aa22.15■■□□□ 1.14
CLN3-221ENST00000566057 FMNL1O95466 1100 aaPredicted RBP22.15■■□□□ 1.14
CLN3-221ENST00000566057 GNRH1P01148 92 aa22.15■■□□□ 1.14
CLN3-221ENST00000566057 ABCB5Q2M3G0 1257 aa22.15■■□□□ 1.14
CLN3-221ENST00000566057 SMCR8Q8TEV9 937 aaPredicted RBP22.15■■□□□ 1.14
CLN3-221ENST00000566057 ARMC5Q96C12 935 aa22.15■■□□□ 1.14
CLN3-221ENST00000566057 PDE4DIPQ5VU43 2346 aa22.14■■□□□ 1.14
CLN3-221ENST00000566057 SALL3Q9BXA9 1300 aa22.14■■□□□ 1.14
CLN3-221ENST00000566057 CYP2D7A0A087X1C5 515 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 C19orf81C9J6K1 198 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 RNF113AO15541 343 aaKnown RBP22.14■■□□□ 1.13
CLN3-221ENST00000566057 OSBPP22059 807 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 GUCY1A2P33402 732 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 RAB3GAP1Q15042 981 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 SLC44A5Q8NCS7 719 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 EXOC6Q8TAG9 804 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 OSBP2Q969R2 916 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 DYNLL2Q96FJ2 89 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 ASCC2Q9H1I8 757 aaPredicted RBP22.14■■□□□ 1.13
CLN3-221ENST00000566057 EMILIN3Q9NT22 766 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 TMOD4Q9NZQ9 345 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 PNMA3Q9UL41 463 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 SLC4A4Q9Y6R1 1079 aa22.14■■□□□ 1.13
CLN3-221ENST00000566057 RBBP6Q7Z6E9 1792 aaKnown RBP22.13■■□□□ 1.13
CLN3-221ENST00000566057 MX1P20591 662 aa22.13■■□□□ 1.13
CLN3-221ENST00000566057 ANKRD13CQ8N6S4 541 aa22.13■■□□□ 1.13
CLN3-221ENST00000566057 GCC1Q96CN9 775 aa22.13■■□□□ 1.13
CLN3-221ENST00000566057 STRBPQ96SI9 672 aaKnown RBP22.13■■□□□ 1.13
CLN3-221ENST00000566057 SRRDQ9UH36 339 aa22.13■■□□□ 1.13
CLN3-221ENST00000566057 USP17L12C9JPN9 530 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 USP17L21D6R901 530 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 ERC2O15083 957 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 GLRX3O76003 335 aaKnown RBP22.12■■□□□ 1.13
CLN3-221ENST00000566057 HOXA7P31268 230 aaPredicted RBP22.12■■□□□ 1.13
CLN3-221ENST00000566057 PABPC4Q13310 644 aaKnown RBP eCLIP22.12■■□□□ 1.13
CLN3-221ENST00000566057 AAMPQ13685 434 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 SLC9C1Q4G0N8 1177 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 C12orf60Q5U649 245 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 ACER1Q8TDN7 264 aa22.12■■□□□ 1.13
CLN3-221ENST00000566057 SUPT16HQ9Y5B9 1047 aaKnown RBP22.12■■□□□ 1.13
CLN3-221ENST00000566057 PRMT2P55345 433 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 FCGRTP55899 365 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 USP17L2Q6R6M4 530 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 SH3TC2Q8TF17 1288 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 APPBP2Q92624 585 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 ZNF333Q96JL9 665 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 P2RX7Q99572 595 aaKnown RBP22.11■■□□□ 1.13
CLN3-221ENST00000566057 CABP5Q9NP86 173 aa22.11■■□□□ 1.13
CLN3-221ENST00000566057 POTEFA5A3E0 1075 aa22.1■■□□□ 1.13
CLN3-221ENST00000566057 HOXD10P28358 340 aa22.1■■□□□ 1.13
CLN3-221ENST00000566057 SEPT2Q15019 361 aa22.1■■□□□ 1.13
CLN3-221ENST00000566057 ZYXQ15942 572 aaKnown RBP22.1■■□□□ 1.13
CLN3-221ENST00000566057 CTR9Q6PD62 1173 aa22.1■■□□□ 1.13
CLN3-221ENST00000566057 GABRQQ9UN88 632 aa22.1■■□□□ 1.13
CLN3-221ENST00000566057 MYPNQ86TC9 1320 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 GSG1L2A8MUP6 293 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 M0R2C6 588 aa22.09■■□□□ 1.13
CLN3-221ENST00000566057 MPHOSPH10O00566 681 aaKnown RBP22.09■■□□□ 1.13
CLN3-221ENST00000566057 ZFYP08048 801 aaPredicted RBP22.09■■□□□ 1.13
CLN3-221ENST00000566057 GCLCP48506 637 aaPredicted RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 138.1 ms