RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HMMRO75330 724 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 CAPN2P17655 700 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 USP5P45974 858 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 IRX3P78415 501 aaPredicted RBP22.79■■□□□ 1.24
CLN3-218ENST00000565688 TTF1Q15361 905 aaPredicted RBP22.79■■□□□ 1.24
CLN3-218ENST00000565688 RPAP2Q8IXW5 612 aaPredicted RBP22.79■■□□□ 1.24
CLN3-218ENST00000565688 MIGA1Q8NAN2 632 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 RHPN1Q8TCX5 695 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 DDX19BQ9UMR2 479 aa22.79■■□□□ 1.24
CLN3-218ENST00000565688 USP17L10C9JJH3 530 aa22.78■■□□□ 1.24
CLN3-218ENST00000565688 HOXA7P31268 230 aaPredicted RBP22.78■■□□□ 1.24
CLN3-218ENST00000565688 HABP4Q5JVS0 413 aaKnown RBP22.78■■□□□ 1.24
CLN3-218ENST00000565688 CLASRPQ8N2M8 674 aaKnown RBP22.78■■□□□ 1.24
CLN3-218ENST00000565688 CHMP4BQ9H444 224 aaKnown RBP22.78■■□□□ 1.24
CLN3-218ENST00000565688 ANTXR1Q9H6X2 564 aa22.78■■□□□ 1.24
CLN3-218ENST00000565688 ZBTB21Q9ULJ3 1066 aa22.78■■□□□ 1.24
CLN3-218ENST00000565688 NDUFB9Q9Y6M9 179 aa22.78■■□□□ 1.24
CLN3-218ENST00000565688 CEP290O15078 2479 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 GDF11O95390 407 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 INHAP05111 366 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 ELNP15502 786 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 JAG1P78504 1218 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 U2AF1L4Q8WU68 220 aaKnown RBP22.77■■□□□ 1.24
CLN3-218ENST00000565688 KIF1BPQ96EK5 621 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 UNC93B1Q9H1C4 597 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 EHD4Q9H223 541 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 IL1RAPL2Q9NP60 686 aa22.77■■□□□ 1.24
CLN3-218ENST00000565688 TTC6Q86TZ1 520 aa22.76■■□□□ 1.23
CLN3-218ENST00000565688 MORF4L1Q9UBU8 362 aa22.76■■□□□ 1.23
CLN3-218ENST00000565688 SERPINB13Q9UIV8 391 aa22.76■■□□□ 1.23
CLN3-218ENST00000565688 TAOK2Q9UL54 1235 aa22.76■■□□□ 1.23
CLN3-218ENST00000565688 TATDN1Q6P1N9 297 aa22.75■■□□□ 1.23
CLN3-218ENST00000565688 UBE2Q1Q7Z7E8 422 aa22.75■■□□□ 1.23
CLN3-218ENST00000565688 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLN3-218ENST00000565688 HTATIP2Q9BUP3 242 aa22.75■■□□□ 1.23
CLN3-218ENST00000565688 ZBTB40Q9NUA8 1239 aa22.75■■□□□ 1.23
CLN3-218ENST00000565688 SGPL1O95470 568 aa22.74■■□□□ 1.23
CLN3-218ENST00000565688 IFIT2P09913 472 aaKnown RBP22.74■■□□□ 1.23
CLN3-218ENST00000565688 COG6Q9Y2V7 657 aa22.74■■□□□ 1.23
CLN3-218ENST00000565688 MYH1P12882 1939 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 H0YGN5 161 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 RAB11FIP3O75154 756 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 GH2P01242 217 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 SHROOM1Q2M3G4 852 aaPredicted RBP22.73■■□□□ 1.23
CLN3-218ENST00000565688 USP17L2Q6R6M4 530 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 GTF3C2Q8WUA4 911 aaPredicted RBP22.73■■□□□ 1.23
CLN3-218ENST00000565688 DPF3Q92784 378 aa22.73■■□□□ 1.23
CLN3-218ENST00000565688 P2RX7Q99572 595 aaKnown RBP22.73■■□□□ 1.23
CLN3-218ENST00000565688 MAGEB6P1A0A0J9YX57 407 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 APBB1O00213 710 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 FARP2O94887 1054 aaPredicted RBP22.72■■□□□ 1.23
CLN3-218ENST00000565688 HERVK_113P62684 666 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 SLC9C2Q5TAH2 1124 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 GPRC5AQ8NFJ5 357 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 RIOK1Q9BRS2 568 aaKnown RBP22.72■■□□□ 1.23
CLN3-218ENST00000565688 PAK6Q9NQU5 681 aaPredicted RBP22.72■■□□□ 1.23
CLN3-218ENST00000565688 GJD2Q9UKL4 321 aa22.72■■□□□ 1.23
CLN3-218ENST00000565688 HMGCRP04035 888 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 PDE6AP16499 860 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 SIRT2Q8IXJ6 389 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 DEFB118Q96PH6 123 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 CRNKL1Q9BZJ0 848 aaKnown RBP22.71■■□□□ 1.23
CLN3-218ENST00000565688 EMILIN3Q9NT22 766 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 RCAN3Q9UKA8 241 aa22.71■■□□□ 1.23
CLN3-218ENST00000565688 DOCK3Q8IZD9 2030 aa22.7■■□□□ 1.23
CLN3-218ENST00000565688 TFRCP02786 760 aaKnown RBP22.7■■□□□ 1.22
CLN3-218ENST00000565688 CERKLQ49MI3 558 aaPredicted RBP22.7■■□□□ 1.22
CLN3-218ENST00000565688 C12orf42Q96LP6 360 aa22.7■■□□□ 1.22
CLN3-218ENST00000565688 FEZ1Q99689 392 aa22.7■■□□□ 1.22
CLN3-218ENST00000565688 GOLIM4O00461 696 aa22.69■■□□□ 1.22
CLN3-218ENST00000565688 POLR3DP05423 398 aaPredicted RBP22.69■■□□□ 1.22
CLN3-218ENST00000565688 USP14P54578 494 aa22.69■■□□□ 1.22
CLN3-218ENST00000565688 ABCB5Q2M3G0 1257 aa22.69■■□□□ 1.22
CLN3-218ENST00000565688 SOCS4Q8WXH5 440 aa22.69■■□□□ 1.22
CLN3-218ENST00000565688 DNAJC2Q99543 621 aaKnown RBP22.69■■□□□ 1.22
CLN3-218ENST00000565688 CABP5Q9NP86 173 aa22.69■■□□□ 1.22
CLN3-218ENST00000565688 ZNF532Q9HCE3 1301 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 MAPK4P31152 587 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 RAB3GAP1Q15042 981 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 CCAR1Q8IX12 1150 aaKnown RBP22.68■■□□□ 1.22
CLN3-218ENST00000565688 KIAA1683Q9H0B3 1180 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 CRISPLD2Q9H0B8 497 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLN3-218ENST00000565688 TXNRD2Q9NNW7 524 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 RBPJLQ9UBG7 517 aa22.68■■□□□ 1.22
CLN3-218ENST00000565688 COLQQ9Y215 455 aaPredicted RBP22.68■■□□□ 1.22
CLN3-218ENST00000565688 USP17L15C9J2P7 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L13C9JLJ4 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L11C9JVI0 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L18D6R9N7 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L22D6RA61 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L17D6RBQ6 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L19D6RCP7 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L20D6RJB6 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 SHMT1P34896 483 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 PLCD1P51178 756 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 ERVK-9P63128 1117 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 ERVK-24P63145 666 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 USP17L24Q0WX57 530 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 PDE3AQ14432 1141 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms