RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CAPN2P17655 700 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 MTMR2Q13614 643 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 SHROOM1Q2M3G4 852 aaPredicted RBP20.88■□□□□ 0.93
CLN3-216ENST00000565316 AACSQ86V21 672 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 TRIM34Q9BYJ4 488 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 ANTXR1Q9H6X2 564 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 MORF4L1Q9UBU8 362 aa20.88■□□□□ 0.93
CLN3-216ENST00000565316 SAP30BPQ9UHR5 308 aaKnown RBP20.88■□□□□ 0.93
CLN3-216ENST00000565316 H0YGN5 161 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 SGPL1O95470 568 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 MS4A1P11836 297 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 HSP90AB4PQ58FF6 505 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 MAGEB6Q8N7X4 407 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 GJD2Q9UKL4 321 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 ZBTB21Q9ULJ3 1066 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 NDUFB9Q9Y6M9 179 aa20.87■□□□□ 0.93
CLN3-216ENST00000565316 USP17L10C9JJH3 530 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 GDF11O95390 407 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 MAP3K12Q12852 859 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 TATDN1Q6P1N9 297 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 MIGA1Q8NAN2 632 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 RHPN1Q8TCX5 695 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 PAK6Q9NQU5 681 aaPredicted RBP20.86■□□□□ 0.93
CLN3-216ENST00000565316 TMOD4Q9NZQ9 345 aa20.86■□□□□ 0.93
CLN3-216ENST00000565316 DOCK3Q8IZD9 2030 aa20.85■□□□□ 0.93
CLN3-216ENST00000565316 P2RX7Q99572 595 aaKnown RBP20.85■□□□□ 0.93
CLN3-216ENST00000565316 EHD4Q9H223 541 aa20.85■□□□□ 0.93
CLN3-216ENST00000565316 COLQQ9Y215 455 aaPredicted RBP20.85■□□□□ 0.93
CLN3-216ENST00000565316 IRX3P78415 501 aaPredicted RBP20.84■□□□□ 0.93
CLN3-216ENST00000565316 RPAP2Q8IXW5 612 aaPredicted RBP20.84■□□□□ 0.93
CLN3-216ENST00000565316 RIOK1Q9BRS2 568 aaKnown RBP20.84■□□□□ 0.93
CLN3-216ENST00000565316 FARP2O94887 1054 aaPredicted RBP20.83■□□□□ 0.93
CLN3-216ENST00000565316 USP5P45974 858 aa20.83■□□□□ 0.93
CLN3-216ENST00000565316 HTATIP2Q9BUP3 242 aa20.83■□□□□ 0.93
CLN3-216ENST00000565316 CRISPLD2Q9H0B8 497 aa20.83■□□□□ 0.93
CLN3-216ENST00000565316 IL1RAPL2Q9NP60 686 aa20.83■□□□□ 0.93
CLN3-216ENST00000565316 EMILIN3Q9NT22 766 aa20.83■□□□□ 0.93
CLN3-216ENST00000565316 GH2P01242 217 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 HERVK_113P62684 666 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 TTF1Q15361 905 aaPredicted RBP20.82■□□□□ 0.92
CLN3-216ENST00000565316 SIRT2Q8IXJ6 389 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.82■□□□□ 0.92
CLN3-216ENST00000565316 DPF3Q92784 378 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 DEFB118Q96PH6 123 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 TXNRD2Q9NNW7 524 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 ZBTB40Q9NUA8 1239 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 SERPINB13Q9UIV8 391 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 TAOK2Q9UL54 1235 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 TRIOBPQ9H2D6 2365 aa20.82■□□□□ 0.92
CLN3-216ENST00000565316 RANBP2P49792 3224 aaKnown RBP20.82■□□□□ 0.92
CLN3-216ENST00000565316 HMGCRP04035 888 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 FXR1P51114 621 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-216ENST00000565316 USP17L2Q6R6M4 530 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 TTC6Q86TZ1 520 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 GPRC5AQ8NFJ5 357 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 KIF1BPQ96EK5 621 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 C12orf42Q96LP6 360 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 RBPJLQ9UBG7 517 aa20.81■□□□□ 0.92
CLN3-216ENST00000565316 TFRCP02786 760 aaKnown RBP20.8■□□□□ 0.92
CLN3-216ENST00000565316 CLASRPQ8N2M8 674 aaKnown RBP20.8■□□□□ 0.92
CLN3-216ENST00000565316 GTF3C2Q8WUA4 911 aaPredicted RBP20.8■□□□□ 0.92
CLN3-216ENST00000565316 DDX19BQ9UMR2 479 aa20.8■□□□□ 0.92
CLN3-216ENST00000565316 MYH1P12882 1939 aa20.8■□□□□ 0.92
CLN3-216ENST00000565316 HMMRO75330 724 aa20.79■□□□□ 0.92
CLN3-216ENST00000565316 PDE6AP16499 860 aa20.79■□□□□ 0.92
CLN3-216ENST00000565316 POTEEQ6S8J3 1075 aa20.79■□□□□ 0.92
CLN3-216ENST00000565316 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-216ENST00000565316 MAGEB6P1A0A0J9YX57 407 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 PEX10O60683 326 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 SHMT1P34896 483 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 PLCD1P51178 756 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 CERKLQ49MI3 558 aaPredicted RBP20.78■□□□□ 0.92
CLN3-216ENST00000565316 SLC9C2Q5TAH2 1124 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 COG6Q9Y2V7 657 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 PLXNB2O15031 1838 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 TCRBV5S4A2TA0A5A2 114 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 RAB11FIP3O75154 756 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 XRCC5P13010 732 aaKnown RBP20.78■□□□□ 0.92
CLN3-216ENST00000565316 MAPK4P31152 587 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 ERVK-9P63128 1117 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 ERVK-24P63145 666 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 GABPAQ06546 454 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 Q3C1V9 767 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 USP6NLQ92738 828 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 KIAA1683Q9H0B3 1180 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 NR2E3Q9Y5X4 410 aa20.78■□□□□ 0.92
CLN3-216ENST00000565316 RPTORQ8N122 1335 aa20.77■□□□□ 0.92
CLN3-216ENST00000565316 IFIT2P09913 472 aaKnown RBP20.77■□□□□ 0.91
CLN3-216ENST00000565316 USP14P54578 494 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 TRIM32Q13049 653 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 ABCB5Q2M3G0 1257 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 MAP3K21Q5TCX8 1036 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 CHRDL2Q6WN34 429 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 SOCS4Q8WXH5 440 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 TRIB2Q92519 343 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 NUDT12Q9BQG2 462 aa20.77■□□□□ 0.91
CLN3-216ENST00000565316 CRNKL1Q9BZJ0 848 aaKnown RBP20.77■□□□□ 0.91
CLN3-216ENST00000565316 DDX60LQ5H9U9 1706 aaKnown RBP20.76■□□□□ 0.91
CLN3-216ENST00000565316 ZNF532Q9HCE3 1301 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L15C9J2P7 530 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms