RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SYMPKQ92797 1274 aaKnown RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 APBA2Q99767 749 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 WDR18Q9BV38 432 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 PORCNQ9H237 461 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 RBPJLQ9UBG7 517 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 HERC5Q9UII4 1024 aaKnown RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 ATP11BQ9Y2G3 1177 aa9.07□□□□□ -0.96
VPS4A-203ENST00000564399 COL2A1P02458 1487 aaPredicted RBP9.07□□□□□ -0.96
VPS4A-203ENST00000564399 PTPRCP08575 1304 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 C19orf81C9J6K1 198 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 USP17L10C9JJH3 530 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 GLRX3O76003 335 aaKnown RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 MAP4K4O95819 1239 aaPredicted RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 ASNSP08243 561 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 UBTFL1P0CB47 393 aaPredicted RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 FOSL2P15408 326 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 RTP1P59025 263 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 TIMM10P62072 90 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 MAP2K5Q13163 448 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 SHHQ15465 462 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 MORN1Q5T089 497 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 GTF3C2Q8WUA4 911 aaPredicted RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 USP6NLQ92738 828 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 EDC3Q96F86 508 aaKnown RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 NOL10Q9BSC4 688 aaKnown RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 TRIM34Q9BYJ4 488 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 PRDM5Q9NQX1 630 aaPredicted RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 RAI14Q9P0K7 980 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 PI4KBQ9UBF8 816 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 PA2G4Q9UQ80 394 aaKnown RBP9.06□□□□□ -0.96
VPS4A-203ENST00000564399 NDUFB9Q9Y6M9 179 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 MAST2Q6P0Q8 1798 aa9.06□□□□□ -0.96
VPS4A-203ENST00000564399 PDS5AQ29RF7 1337 aaKnown RBP9.05□□□□□ -0.96
VPS4A-203ENST00000564399 MSCO60682 206 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 MYCNP04198 464 aaPredicted RBP9.05□□□□□ -0.96
VPS4A-203ENST00000564399 COL9A1P20849 921 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 CCNA1P78396 465 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 ATP2B2Q01814 1243 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 C9orf50Q5SZB4 431 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 CRACR2BQ8N4Y2 399 aaPredicted RBP9.05□□□□□ -0.96
VPS4A-203ENST00000564399 LPAR1Q92633 364 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 XAGE2Q96GT9 111 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 NEUROD6Q96NK8 337 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 DDX20Q9UHI6 824 aaKnown RBP9.05□□□□□ -0.96
VPS4A-203ENST00000564399 LAMA2P24043 3122 aaKnown RBP9.05□□□□□ -0.96
VPS4A-203ENST00000564399 SMCHD1A6NHR9 2005 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 RLFQ13129 1914 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 LTBP2Q14767 1821 aa9.05□□□□□ -0.96
VPS4A-203ENST00000564399 CDK5RAP2Q96SN8 1893 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 DNAH12Q6ZR08 3092 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 A0A1B0GUL7 405 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 DNM1LO00429 736 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 ZBTB22O15209 634 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 GDF11O95390 407 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 MVPQ14764 893 aaKnown RBP9.04□□□□□ -0.96
VPS4A-203ENST00000564399 GJC2Q5T442 439 aaPredicted RBP9.04□□□□□ -0.96
VPS4A-203ENST00000564399 GORABQ5T7V8 394 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 TBC1D9Q6ZT07 1266 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 ZNF384Q8TF68 577 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 BADQ92934 168 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 NSUN4Q96CB9 384 aaKnown RBP9.04□□□□□ -0.96
VPS4A-203ENST00000564399 DHX36Q9H2U1 1008 aaKnown RBP9.04□□□□□ -0.96
VPS4A-203ENST00000564399 TTYH1Q9H313 450 aaPredicted RBP9.04□□□□□ -0.96
VPS4A-203ENST00000564399 FLRT1Q9NZU1 646 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 HDAC5Q9UQL6 1122 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 AKAP2Q9Y2D5 859 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 IVNS1ABPQ9Y6Y0 642 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 PRUNE2Q8WUY3 3088 aa9.04□□□□□ -0.96
VPS4A-203ENST00000564399 SLC15A5A6NIM6 579 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 KBTBD13C9JR72 458 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 CYP2C19P33261 490 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 JAG1P78504 1218 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SMAD3P84022 425 aaKnown RBP9.03□□□□□ -0.96
VPS4A-203ENST00000564399 ZYXQ15942 572 aaKnown RBP9.03□□□□□ -0.96
VPS4A-203ENST00000564399 USP17L2Q6R6M4 530 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 PI16Q6UXB8 463 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SLC39A5Q6ZMH5 540 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 FOXP4Q8IVH2 680 aaPredicted RBP9.03□□□□□ -0.96
VPS4A-203ENST00000564399 MAPKAPK5Q8IW41 473 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SPATA5Q8NB90 893 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 ARRDC4Q8NCT1 418 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SH3RF3Q8TEJ3 882 aaPredicted RBP9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SSH1Q8WYL5 1049 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 FEZ1Q99689 392 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 COPRSQ9NQ92 184 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 HMG20BQ9P0W2 317 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 LRP2BPQ9P2M1 347 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 RABGAP1Q9Y3P9 1069 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 SIPA1L1O43166 1804 aa9.03□□□□□ -0.96
VPS4A-203ENST00000564399 USP17L15C9J2P7 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L13C9JLJ4 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L11C9JVI0 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L18D6R9N7 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L22D6RA61 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L17D6RBQ6 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L19D6RCP7 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L20D6RJB6 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 TNFRSF10AO00220 468 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 BAG3O95817 575 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 PLCG2P16885 1265 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms