RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 U2AF1L4Q8WU68 220 aaKnown RBP19.21■□□□□ 0.67
CLK3-211ENST00000563297 GINM1Q9NU53 330 aa19.21■□□□□ 0.67
CLK3-211ENST00000563297 C19orf81C9J6K1 198 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 H0YGN5 161 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 GDF11O95390 407 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 SGPL1O95470 568 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 HOXA7P31268 230 aaPredicted RBP19.2■□□□□ 0.66
CLK3-211ENST00000563297 MTMR2Q13614 643 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 TRIM34Q9BYJ4 488 aa19.2■□□□□ 0.66
CLK3-211ENST00000563297 MYH1P12882 1939 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 USP17L10C9JJH3 530 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 INHAP05111 366 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 HLA-DOAP06340 250 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 MAP3K12Q12852 859 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 DPF3Q92784 378 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 P2RX7Q99572 595 aaKnown RBP19.19■□□□□ 0.66
CLK3-211ENST00000563297 TMOD4Q9NZQ9 345 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 GJD2Q9UKL4 321 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 TAOK2Q9UL54 1235 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 ZBTB21Q9ULJ3 1066 aa19.19■□□□□ 0.66
CLK3-211ENST00000563297 COLQQ9Y215 455 aaPredicted RBP19.19■□□□□ 0.66
CLK3-211ENST00000563297 USP5P45974 858 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 HSP90AB4PQ58FF6 505 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 CERS3Q8IU89 383 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 RHPN1Q8TCX5 695 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 IL1RAPL2Q9NP60 686 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 MORF4L1Q9UBU8 362 aa19.18■□□□□ 0.66
CLK3-211ENST00000563297 MS4A1P11836 297 aa19.17■□□□□ 0.66
CLK3-211ENST00000563297 IRX3P78415 501 aaPredicted RBP19.17■□□□□ 0.66
CLK3-211ENST00000563297 TATDN1Q6P1N9 297 aa19.17■□□□□ 0.66
CLK3-211ENST00000563297 TMED8Q6PL24 325 aaPredicted RBP19.17■□□□□ 0.66
CLK3-211ENST00000563297 RPAP2Q8IXW5 612 aaPredicted RBP19.16■□□□□ 0.66
CLK3-211ENST00000563297 DEFB118Q96PH6 123 aa19.16■□□□□ 0.66
CLK3-211ENST00000563297 PAK6Q9NQU5 681 aaPredicted RBP19.16■□□□□ 0.66
CLK3-211ENST00000563297 EMILIN3Q9NT22 766 aa19.16■□□□□ 0.66
CLK3-211ENST00000563297 PEX10O60683 326 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 FARP2O94887 1054 aaPredicted RBP19.15■□□□□ 0.66
CLK3-211ENST00000563297 GH2P01242 217 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 TFRCP02786 760 aaKnown RBP19.15■□□□□ 0.66
CLK3-211ENST00000563297 CAPN2P17655 700 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 HERVK_113P62684 666 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 TTC6Q86TZ1 520 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 SIRT2Q8IXJ6 389 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 RIOK1Q9BRS2 568 aaKnown RBP19.15■□□□□ 0.66
CLK3-211ENST00000563297 HTATIP2Q9BUP3 242 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 TXNRD2Q9NNW7 524 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 ZBTB40Q9NUA8 1239 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 RBPJLQ9UBG7 517 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 SERPINB13Q9UIV8 391 aa19.15■□□□□ 0.66
CLK3-211ENST00000563297 TRIOBPQ9H2D6 2365 aa19.14■□□□□ 0.66
CLK3-211ENST00000563297 FXR1P51114 621 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLK3-211ENST00000563297 PLCD1P51178 756 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 TTF1Q15361 905 aaPredicted RBP19.14■□□□□ 0.65
CLK3-211ENST00000563297 Q3C1V9 767 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 USP17L2Q6R6M4 530 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 CLASRPQ8N2M8 674 aaKnown RBP19.14■□□□□ 0.65
CLK3-211ENST00000563297 GPRC5AQ8NFJ5 357 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 KIF1BPQ96EK5 621 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 CRISPLD2Q9H0B8 497 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 EHD4Q9H223 541 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 COG6Q9Y2V7 657 aa19.14■□□□□ 0.65
CLK3-211ENST00000563297 APBB1O00213 710 aa19.13■□□□□ 0.65
CLK3-211ENST00000563297 POTEEQ6S8J3 1075 aa19.13■□□□□ 0.65
CLK3-211ENST00000563297 DDX19BQ9UMR2 479 aa19.13■□□□□ 0.65
CLK3-211ENST00000563297 PLXNB2O15031 1838 aa19.13■□□□□ 0.65
CLK3-211ENST00000563297 MAGEB6P1A0A0J9YX57 407 aa19.12■□□□□ 0.65
CLK3-211ENST00000563297 HMGCRP04035 888 aa19.12■□□□□ 0.65
CLK3-211ENST00000563297 TRIM32Q13049 653 aa19.12■□□□□ 0.65
CLK3-211ENST00000563297 CERKLQ49MI3 558 aaPredicted RBP19.12■□□□□ 0.65
CLK3-211ENST00000563297 SLC9C2Q5TAH2 1124 aa19.12■□□□□ 0.65
CLK3-211ENST00000563297 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLK3-211ENST00000563297 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLK3-211ENST00000563297 HMMRO75330 724 aa19.11■□□□□ 0.65
CLK3-211ENST00000563297 PDE6AP16499 860 aa19.11■□□□□ 0.65
CLK3-211ENST00000563297 C12orf42Q96LP6 360 aa19.11■□□□□ 0.65
CLK3-211ENST00000563297 RPTORQ8N122 1335 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 GOLIM4O00461 696 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 RAB11FIP3O75154 756 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 IFIT2P09913 472 aaKnown RBP19.1■□□□□ 0.65
CLK3-211ENST00000563297 CYP2B6P20813 491 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 SHMT1P34896 483 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 ERVK-9P63128 1117 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 ERVK-24P63145 666 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 RAB3GAP1Q15042 981 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 ZYXQ15942 572 aaKnown RBP19.1■□□□□ 0.65
CLK3-211ENST00000563297 ABCB5Q2M3G0 1257 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 CHRDL2Q6WN34 429 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 ACER1Q8TDN7 264 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 NUDT12Q9BQG2 462 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 HMX1Q9NP08 348 aaPredicted RBP19.1■□□□□ 0.65
CLK3-211ENST00000563297 NR2E3Q9Y5X4 410 aa19.1■□□□□ 0.65
CLK3-211ENST00000563297 ZNF532Q9HCE3 1301 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 TCRBV5S4A2TA0A5A2 114 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L15C9J2P7 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L13C9JLJ4 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L11C9JVI0 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L18D6R9N7 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L22D6RA61 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L17D6RBQ6 530 aa19.09■□□□□ 0.65
CLK3-211ENST00000563297 USP17L19D6RCP7 530 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms