RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 TDO2P48775 406 aa20■□□□□ 0.79
CLK3-207ENST00000562389 SNAPC2Q13487 334 aa20■□□□□ 0.79
CLK3-207ENST00000562389 ZHX2Q9Y6X8 837 aa20■□□□□ 0.79
CLK3-207ENST00000562389 CCDC171Q6TFL3 1326 aa20■□□□□ 0.79
CLK3-207ENST00000562389 CXCL11O14625 94 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 FOXN1O15353 648 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 FOXP2O15409 715 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 GDF11O95390 407 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 CERKLQ49MI3 558 aaPredicted RBP19.99■□□□□ 0.79
CLK3-207ENST00000562389 C16orf86Q6ZW13 317 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 ZNF589Q86UQ0 364 aaPredicted RBP19.99■□□□□ 0.79
CLK3-207ENST00000562389 IFNL1Q8IU54 200 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 RNF186Q9NXI6 227 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.99■□□□□ 0.79
CLK3-207ENST00000562389 ZBTB21Q9ULJ3 1066 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 AFG3L2Q9Y4W6 797 aa19.99■□□□□ 0.79
CLK3-207ENST00000562389 PCNTO95613 3336 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 CCL15-CCL14A0A0B4J2E2 113 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 CETPP11597 493 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 MFAP1P55081 439 aaKnown RBP19.98■□□□□ 0.79
CLK3-207ENST00000562389 JAG1P78504 1218 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 CCL15Q16663 113 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 CWC27Q6UX04 472 aaKnown RBP19.98■□□□□ 0.79
CLK3-207ENST00000562389 SKAP1Q86WV1 359 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 BRI3BPQ8WY22 251 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 DYNLL2Q96FJ2 89 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 NAPBQ9H115 298 aa19.98■□□□□ 0.79
CLK3-207ENST00000562389 USP17L5A8MUK1 530 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 SMIM22K7EJ46 135 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 IGF2BP3O00425 579 aaKnown RBP eCLIP19.97■□□□□ 0.79
CLK3-207ENST00000562389 ALDH1A1P00352 501 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 CTCFP49711 727 aaPredicted RBP19.97■□□□□ 0.79
CLK3-207ENST00000562389 VPS53Q5VIR6 699 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 CCDC84Q86UT8 332 aaPredicted RBP19.97■□□□□ 0.79
CLK3-207ENST00000562389 SLC44A5Q8NCS7 719 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 PTPN18Q99952 460 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 AS3MTQ9HBK9 375 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 LOC285556D6RIA3 1793 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 ZMYM6O95789 1325 aa19.97■□□□□ 0.79
CLK3-207ENST00000562389 A0A0G2JLL6 359 aaPredicted RBP19.96■□□□□ 0.79
CLK3-207ENST00000562389 MINDY4BA8MYZ0 360 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 GH2P01242 217 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 CDK8P49336 464 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 ALX1Q15699 326 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 ABCB5Q2M3G0 1257 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 SHROOM1Q2M3G4 852 aaPredicted RBP19.96■□□□□ 0.79
CLK3-207ENST00000562389 OTUD7BQ6GQQ9 843 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 PRRT2Q7Z6L0 340 aaPredicted RBP19.96■□□□□ 0.79
CLK3-207ENST00000562389 CFHR5Q9BXR6 569 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 RAD50Q92878 1312 aa19.96■□□□□ 0.79
CLK3-207ENST00000562389 TRPA1O75762 1119 aa19.95■□□□□ 0.78
CLK3-207ENST00000562389 HSPD1P10809 573 aaKnown RBP19.95■□□□□ 0.78
CLK3-207ENST00000562389 HSPA8P11142 646 aaKnown RBP19.95■□□□□ 0.78
CLK3-207ENST00000562389 BMP2KLQ5H9B9 411 aa19.95■□□□□ 0.78
CLK3-207ENST00000562389 ZNF280CQ8ND82 737 aa19.95■□□□□ 0.78
CLK3-207ENST00000562389 WDR18Q9BV38 432 aa19.95■□□□□ 0.78
CLK3-207ENST00000562389 CABP5Q9NP86 173 aa19.95■□□□□ 0.78
CLK3-207ENST00000562389 GREB1LQ9C091 1923 aaPredicted RBP19.94■□□□□ 0.78
CLK3-207ENST00000562389 TRIM75PA6NK02 468 aa19.94■□□□□ 0.78
CLK3-207ENST00000562389 CHMLP26374 656 aa19.94■□□□□ 0.78
CLK3-207ENST00000562389 MOGSQ13724 837 aa19.94■□□□□ 0.78
CLK3-207ENST00000562389 CCDC17Q96LX7 622 aa19.94■□□□□ 0.78
CLK3-207ENST00000562389 ZCCHC17Q9NP64 241 aaKnown RBP19.94■□□□□ 0.78
CLK3-207ENST00000562389 LAMA4Q16363 1823 aa19.93■□□□□ 0.78
CLK3-207ENST00000562389 PPARAQ07869 468 aa19.93■□□□□ 0.78
CLK3-207ENST00000562389 FASTKD5Q7L8L6 764 aaKnown RBP19.93■□□□□ 0.78
CLK3-207ENST00000562389 FAM43AQ8N2R8 423 aa19.93■□□□□ 0.78
CLK3-207ENST00000562389 TSKSQ9UJT2 592 aa19.93■□□□□ 0.78
CLK3-207ENST00000562389 BTBD19C9JJ37 291 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 FGAP02671 866 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 GUCY1A2P33402 732 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 SPP2Q13103 211 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 RAB3GAP1Q15042 981 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 SH3D19Q5HYK7 790 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 TMEM179Q6ZVK1 233 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 ANKRD23Q86SG2 305 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 RUFY2Q8WXA3 655 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 ZNF287Q9HBT7 754 aa19.92■□□□□ 0.78
CLK3-207ENST00000562389 MPHOSPH10O00566 681 aaKnown RBP19.91■□□□□ 0.78
CLK3-207ENST00000562389 SLC3A2P08195 630 aaKnown RBP19.91■□□□□ 0.78
CLK3-207ENST00000562389 AKR1B1P15121 316 aa19.91■□□□□ 0.78
CLK3-207ENST00000562389 LBX1P52954 281 aa19.91■□□□□ 0.78
CLK3-207ENST00000562389 PROCA1Q8NCQ7 364 aaPredicted RBP19.91■□□□□ 0.78
CLK3-207ENST00000562389 DSCC1Q9BVC3 393 aa19.91■□□□□ 0.78
CLK3-207ENST00000562389 IL25Q9H293 177 aa19.91■□□□□ 0.78
CLK3-207ENST00000562389 ANAPC4Q9UJX5 808 aa19.91■□□□□ 0.78
CLK3-207ENST00000562389 RASA1P20936 1047 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 BACE1P56817 501 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 PDE4BQ07343 736 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 SEPT2Q15019 361 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 NOM1Q5C9Z4 860 aaKnown RBP19.9■□□□□ 0.78
CLK3-207ENST00000562389 GPAT2Q6NUI2 795 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 MKNK2Q9HBH9 465 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 PRDM10Q9NQV6 1147 aa19.9■□□□□ 0.78
CLK3-207ENST00000562389 C19orf81C9J6K1 198 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 USP17L10C9JJH3 530 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 TBC1D8O95759 1140 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 HMGCS2P54868 508 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 MTMR2Q13614 643 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 TAF1CQ15572 869 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms