RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TNPO2O14787 897 aaKnown RBP14.24□□□□□ -0.13
USP3-220ENST00000561381 ADCY3O60266 1144 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 PLCG2P16885 1265 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 DIEXFQ68CQ4 756 aaKnown RBP14.24□□□□□ -0.13
USP3-220ENST00000561381 PROCA1Q8NCQ7 364 aaPredicted RBP14.24□□□□□ -0.13
USP3-220ENST00000561381 SLAIN1Q8ND83 568 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 UNC93B1Q9H1C4 597 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 SAP30BPQ9UHR5 308 aaKnown RBP14.24□□□□□ -0.13
USP3-220ENST00000561381 EXOC6BQ9Y2D4 811 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 LOC285556D6RIA3 1793 aa14.24□□□□□ -0.13
USP3-220ENST00000561381 H0YGN5 161 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 GJB1P08034 283 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 CYP7A1P22680 504 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 GJA8P48165 433 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 UBXN2AP68543 259 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 MTMR2Q13614 643 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 ASCC2Q9H1I8 757 aaPredicted RBP14.23□□□□□ -0.13
USP3-220ENST00000561381 DHX36Q9H2U1 1008 aaKnown RBP14.23□□□□□ -0.13
USP3-220ENST00000561381 ANTXR1Q9H6X2 564 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 PNMA3Q9UL41 463 aa14.23□□□□□ -0.13
USP3-220ENST00000561381 PEX10O60683 326 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 IDH1O75874 414 aaKnown RBP14.22□□□□□ -0.13
USP3-220ENST00000561381 GDF11O95390 407 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 INHAP05111 366 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 FAM110CQ1W6H9 321 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 SH3D19Q5HYK7 790 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 UBE2Q1Q7Z7E8 422 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 METTL16Q86W50 562 aaKnown RBP14.22□□□□□ -0.13
USP3-220ENST00000561381 MIGA1Q8NAN2 632 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 TBC1D2Q9BYX2 928 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 TAOK2Q9UL54 1235 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 COLQQ9Y215 455 aaPredicted RBP14.22□□□□□ -0.13
USP3-220ENST00000561381 FOCADQ5VW36 1801 aa14.22□□□□□ -0.13
USP3-220ENST00000561381 ZBED9Q6R2W3 1325 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 IRF5Q13568 498 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 AACSQ86V21 672 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 FOXP4Q8IVH2 680 aaPredicted RBP14.21□□□□□ -0.13
USP3-220ENST00000561381 CRACR2BQ8N4Y2 399 aaPredicted RBP14.21□□□□□ -0.13
USP3-220ENST00000561381 MAGEB6Q8N7X4 407 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 NKX2-3Q8TAU0 364 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 PXYLP1Q8TE99 480 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 U2AF1L4Q8WU68 220 aaKnown RBP14.21□□□□□ -0.13
USP3-220ENST00000561381 COA7Q96BR5 231 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 WDR18Q9BV38 432 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 AS3MTQ9HBK9 375 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 PCDH10Q9P2E7 1040 aa14.21□□□□□ -0.13
USP3-220ENST00000561381 ASNSP08243 561 aa14.2□□□□□ -0.14
USP3-220ENST00000561381 GCLCP48506 637 aaPredicted RBP14.2□□□□□ -0.14
USP3-220ENST00000561381 BACE1P56817 501 aa14.2□□□□□ -0.14
USP3-220ENST00000561381 DPF3Q92784 378 aa14.2□□□□□ -0.14
USP3-220ENST00000561381 TRIM34Q9BYJ4 488 aa14.2□□□□□ -0.14
USP3-220ENST00000561381 IL1RAPL2Q9NP60 686 aa14.2□□□□□ -0.14
USP3-220ENST00000561381 CEP290O15078 2479 aa14.19□□□□□ -0.14
USP3-220ENST00000561381 SGPL1O95470 568 aa14.19□□□□□ -0.14
USP3-220ENST00000561381 HLA-DOAP06340 250 aa14.19□□□□□ -0.14
USP3-220ENST00000561381 PABPC4Q13310 644 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP3-220ENST00000561381 P2RX7Q99572 595 aaKnown RBP14.19□□□□□ -0.14
USP3-220ENST00000561381 ZBTB21Q9ULJ3 1066 aa14.19□□□□□ -0.14
USP3-220ENST00000561381 USP17L10C9JJH3 530 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 APBB1O00213 710 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 IGSF3O75054 1194 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 FARP2O94887 1054 aaPredicted RBP14.18□□□□□ -0.14
USP3-220ENST00000561381 USP5P45974 858 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 FXR1P51114 621 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP3-220ENST00000561381 IRX3P78415 501 aaPredicted RBP14.18□□□□□ -0.14
USP3-220ENST00000561381 ERC1Q8IUD2 1116 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 RHPN1Q8TCX5 695 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 MS4A3Q96HJ5 214 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 DEFB118Q96PH6 123 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 TXNRD2Q9NNW7 524 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 TMOD4Q9NZQ9 345 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 GJD2Q9UKL4 321 aa14.18□□□□□ -0.14
USP3-220ENST00000561381 MYH1P12882 1939 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 C19orf81C9J6K1 198 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 GH2P01242 217 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 HOXA7P31268 230 aaPredicted RBP14.17□□□□□ -0.14
USP3-220ENST00000561381 MAP3K12Q12852 859 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 TRIM32Q13049 653 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 POTEEQ6S8J3 1075 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 BCL11AQ9H165 835 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 PAK6Q9NQU5 681 aaPredicted RBP14.17□□□□□ -0.14
USP3-220ENST00000561381 EMILIN3Q9NT22 766 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 MORF4L1Q9UBU8 362 aa14.17□□□□□ -0.14
USP3-220ENST00000561381 TFRCP02786 760 aaKnown RBP14.16□□□□□ -0.14
USP3-220ENST00000561381 HERVK_113P62684 666 aa14.16□□□□□ -0.14
USP3-220ENST00000561381 SIRT2Q8IXJ6 389 aa14.16□□□□□ -0.14
USP3-220ENST00000561381 GINM1Q9NU53 330 aa14.16□□□□□ -0.14
USP3-220ENST00000561381 COG6Q9Y2V7 657 aa14.16□□□□□ -0.14
USP3-220ENST00000561381 PLXNB2O15031 1838 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 TRIOBPQ9H2D6 2365 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 PLCD1P51178 756 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 ZYXQ15942 572 aaKnown RBP14.15□□□□□ -0.14
USP3-220ENST00000561381 Q3C1V9 767 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 TATDN1Q6P1N9 297 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 RIOK1Q9BRS2 568 aaKnown RBP14.15□□□□□ -0.14
USP3-220ENST00000561381 HTATIP2Q9BUP3 242 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 CRISPLD2Q9H0B8 497 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.15□□□□□ -0.14
USP3-220ENST00000561381 RBPJLQ9UBG7 517 aa14.15□□□□□ -0.14
USP3-220ENST00000561381 SERPINB13Q9UIV8 391 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 222 ms