RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 MAP3K11Q16584 847 aa8.36□□□□□ -1.07
LRRC28-220ENST00000561253 METTL16Q86W50 562 aaKnown RBP8.36□□□□□ -1.07
LRRC28-220ENST00000561253 MAP4K3Q8IVH8 894 aa8.36□□□□□ -1.07
LRRC28-220ENST00000561253 CARD11Q9BXL7 1154 aa8.36□□□□□ -1.07
LRRC28-220ENST00000561253 SOX17Q9H6I2 414 aaPredicted RBP8.36□□□□□ -1.07
LRRC28-220ENST00000561253 SRA1Q9HD15 236 aaKnown RBP8.36□□□□□ -1.07
LRRC28-220ENST00000561253 OSGEPQ9NPF4 335 aa8.36□□□□□ -1.07
LRRC28-220ENST00000561253 MKL2Q9ULH7 1088 aa8.36□□□□□ -1.07
LRRC28-220ENST00000561253 MSH6P52701 1360 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 USP47Q96K76 1375 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 PRR36Q9H6K5 1346 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 CENPJQ9HC77 1338 aaPredicted RBP8.35□□□□□ -1.07
LRRC28-220ENST00000561253 TULP4Q9NRJ4 1543 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 EIF4EBP3O60516 100 aaPredicted RBP8.35□□□□□ -1.07
LRRC28-220ENST00000561253 SNRPNP63162 240 aaKnown RBP8.35□□□□□ -1.07
LRRC28-220ENST00000561253 PWP1Q13610 501 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 PODNQ7Z5L7 613 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 USP48Q86UV5 1035 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 RELL1Q8IUW5 271 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 KLHL23Q8NBE8 558 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 TRIM56Q9BRZ2 755 aaKnown RBP8.35□□□□□ -1.07
LRRC28-220ENST00000561253 CARD10Q9BWT7 1032 aa8.35□□□□□ -1.07
LRRC28-220ENST00000561253 C1orf167Q5SNV9 1468 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 SPDYE3A6NKU9 549 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 GNB5O14775 395 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 INSM1Q01101 510 aaPredicted RBP8.34□□□□□ -1.07
LRRC28-220ENST00000561253 SAFB2Q14151 953 aaKnown RBP eCLIP8.34□□□□□ -1.07
LRRC28-220ENST00000561253 SETDB1Q15047 1291 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 HGSNATQ68CP4 663 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 TTBK2Q6IQ55 1244 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 ERMP1Q7Z2K6 904 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 DTWD1Q8N5C7 304 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 RSRP1Q9BUV0 290 aa8.34□□□□□ -1.07
LRRC28-220ENST00000561253 ATP7BP35670 1465 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 USP32Q8NFA0 1604 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 ST20-MTHFSA0A0A6YYL1 179 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 PAGE1O75459 146 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 LMNB1P20700 586 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 NME2P22392 152 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 GBP2P32456 591 aaPredicted RBP8.33□□□□□ -1.08
LRRC28-220ENST00000561253 LIG3P49916 1009 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 RAC1P63000 192 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 AP3B2Q13367 1082 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 ZNF394Q53GI3 561 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 PCNX4Q63HM2 1172 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 LINC00114Q6XXX2 140 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 SULF2Q8IWU5 870 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 TRIM11Q96F44 468 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 PLVAPQ9BX97 442 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 KBTBD4Q9NVX7 518 aa8.33□□□□□ -1.08
LRRC28-220ENST00000561253 FMN2Q9NZ56 1722 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 ANKARQ7Z5J8 1434 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 F6X3S4 739 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 SUZ12Q15022 739 aaKnown RBP8.32□□□□□ -1.08
LRRC28-220ENST00000561253 BEND7Q8N7W2 519 aaPredicted RBP8.32□□□□□ -1.08
LRRC28-220ENST00000561253 FBXO41Q8TF61 875 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 KLHDC7BQ96G42 594 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 HIRIP3Q9BW71 556 aaPredicted RBP8.32□□□□□ -1.08
LRRC28-220ENST00000561253 EMILIN2Q9BXX0 1053 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 TGIF2Q9GZN2 237 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 CBX8Q9HC52 389 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 COPRSQ9NQ92 184 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 POGKQ9P215 609 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 PCDHGB7Q9Y5F8 929 aa8.32□□□□□ -1.08
LRRC28-220ENST00000561253 EIF3AQ14152 1382 aaKnown RBP8.32□□□□□ -1.08
LRRC28-220ENST00000561253 QRICH2Q9H0J4 1663 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 A0A0A0MRY4 1105 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 TOM1O60784 492 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 CYP11A1P05108 521 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 ATF3P18847 181 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 LORP23490 312 aaPredicted RBP8.31□□□□□ -1.08
LRRC28-220ENST00000561253 TRIM28Q13263 835 aaKnown RBP8.31□□□□□ -1.08
LRRC28-220ENST00000561253 ILDR2Q71H61 639 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 BRINP3Q76B58 766 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 ZNF654Q8IZM8 581 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 GALNT11Q8NCW6 608 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 TMEM74Q96NL1 305 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 CCSER2Q9H7U1 834 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 DDX41Q9UJV9 622 aaKnown RBP8.31□□□□□ -1.08
LRRC28-220ENST00000561253 ADAMTS8Q9UP79 889 aa8.31□□□□□ -1.08
LRRC28-220ENST00000561253 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.31□□□□□ -1.08
LRRC28-220ENST00000561253 MINDY4BA8MYZ0 360 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 DEAF1O75398 565 aaPredicted RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 HSPA5P11021 654 aaKnown RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 BMP6P22004 513 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 ARNTP27540 789 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 CD68P34810 354 aaPredicted RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 NLRP12P59046 1061 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 RPS26P62854 115 aaKnown RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 RAD51AP2Q09MP3 1159 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 LRRC14Q15048 493 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 FMR1NBQ8N0W7 255 aaPredicted RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 ORAI2Q96SN7 254 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 CORO1BQ9BR76 489 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 CDK19Q9BWU1 502 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 NOP53Q9NZM5 478 aaKnown RBP8.3□□□□□ -1.08
LRRC28-220ENST00000561253 CYP8B1Q9UNU6 501 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 DISP3Q9P2K9 1392 aa8.3□□□□□ -1.08
LRRC28-220ENST00000561253 RACK1P63244 317 aaKnown RBP8.29□□□□□ -1.08
LRRC28-220ENST00000561253 POU4F3Q15319 338 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms