RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 RBPJLQ9UBG7 517 aa22.86■■□□□ 1.25
TPM1-226ENST00000560959 USP17L10C9JJH3 530 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 SRGAP3O43295 1099 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 BAG3O95817 575 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 GNAI3P08754 354 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 PLCG2P16885 1265 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 RGS2P41220 211 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 MORN1Q5T089 497 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 TBC1D9Q6ZT07 1266 aa22.85■■□□□ 1.25
TPM1-226ENST00000560959 TRMT2AQ8IZ69 625 aaKnown RBP22.85■■□□□ 1.25
TPM1-226ENST00000560959 NOL10Q9BSC4 688 aaKnown RBP22.85■■□□□ 1.25
TPM1-226ENST00000560959 DDX60LQ5H9U9 1706 aaKnown RBP22.85■■□□□ 1.25
TPM1-226ENST00000560959 PPP4CP60510 307 aa22.84■■□□□ 1.25
TPM1-226ENST00000560959 GORABQ5T7V8 394 aa22.84■■□□□ 1.25
TPM1-226ENST00000560959 LRP2BPQ9P2M1 347 aa22.84■■□□□ 1.25
TPM1-226ENST00000560959 PLXNB2O15031 1838 aa22.84■■□□□ 1.25
TPM1-226ENST00000560959 POTEB2H3BUK9 544 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 UQCRFS1P1P0C7P4 283 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 ERVK-9P63128 1117 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 ERVK-24P63145 666 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 Q3C1V9 767 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 PI16Q6UXB8 463 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 GPR142Q7Z601 462 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 CCAR1Q8IX12 1150 aaKnown RBP22.83■■□□□ 1.25
TPM1-226ENST00000560959 SH3RF3Q8TEJ3 882 aaPredicted RBP22.83■■□□□ 1.25
TPM1-226ENST00000560959 UNC80Q8N2C7 3258 aa22.83■■□□□ 1.25
TPM1-226ENST00000560959 LRRC26Q2I0M4 334 aa22.82■■□□□ 1.24
TPM1-226ENST00000560959 PLEKHH3Q7Z736 793 aa22.82■■□□□ 1.24
TPM1-226ENST00000560959 ARHGAP45Q92619 1136 aa22.82■■□□□ 1.24
TPM1-226ENST00000560959 APBA2Q99767 749 aa22.82■■□□□ 1.24
TPM1-226ENST00000560959 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.82■■□□□ 1.24
TPM1-226ENST00000560959 MCAMP43121 646 aa22.81■■□□□ 1.24
TPM1-226ENST00000560959 JAG1P78504 1218 aa22.81■■□□□ 1.24
TPM1-226ENST00000560959 CCND3P30281 292 aaPredicted RBP22.8■■□□□ 1.24
TPM1-226ENST00000560959 PORCNQ9H237 461 aa22.8■■□□□ 1.24
TPM1-226ENST00000560959 DNAJC18Q9H819 358 aa22.8■■□□□ 1.24
TPM1-226ENST00000560959 RABGAP1Q9Y3P9 1069 aa22.8■■□□□ 1.24
TPM1-226ENST00000560959 NAA16Q6N069 864 aaPredicted RBP22.79■■□□□ 1.24
TPM1-226ENST00000560959 USP17L2Q6R6M4 530 aa22.79■■□□□ 1.24
TPM1-226ENST00000560959 CDCA7LQ96GN5 454 aa22.79■■□□□ 1.24
TPM1-226ENST00000560959 TRIM34Q9BYJ4 488 aa22.79■■□□□ 1.24
TPM1-226ENST00000560959 EMILIN3Q9NT22 766 aa22.79■■□□□ 1.24
TPM1-226ENST00000560959 AATFQ9NY61 560 aaKnown RBP eCLIP22.79■■□□□ 1.24
TPM1-226ENST00000560959 ATAD5Q96QE3 1844 aa22.79■■□□□ 1.24
TPM1-226ENST00000560959 MSCO60682 206 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 PEX10O60683 326 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 GLRX3O76003 335 aaKnown RBP22.78■■□□□ 1.24
TPM1-226ENST00000560959 CCNA1P78396 465 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 MAP2K5Q13163 448 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 CCL14Q16627 93 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 POTEEQ6S8J3 1075 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 ATF7IPQ6VMQ6 1270 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 CRACR2BQ8N4Y2 399 aaPredicted RBP22.78■■□□□ 1.24
TPM1-226ENST00000560959 TGFBRAP1Q8WUH2 860 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 EDC3Q96F86 508 aaKnown RBP22.78■■□□□ 1.24
TPM1-226ENST00000560959 C12orf42Q96LP6 360 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 COL25A1Q9BXS0 654 aaPredicted RBP22.78■■□□□ 1.24
TPM1-226ENST00000560959 ZBTB21Q9ULJ3 1066 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 FLT1P17948 1338 aa22.78■■□□□ 1.24
TPM1-226ENST00000560959 MDM2Q00987 491 aaPredicted RBP22.77■■□□□ 1.24
TPM1-226ENST00000560959 G3BP1Q13283 466 aaKnown RBP eCLIP22.77■■□□□ 1.24
TPM1-226ENST00000560959 MFSD14CQ5VZR4 134 aa22.77■■□□□ 1.24
TPM1-226ENST00000560959 HLA-DOAP06340 250 aa22.76■■□□□ 1.23
TPM1-226ENST00000560959 MAPKAPK5Q8IW41 473 aa22.76■■□□□ 1.23
TPM1-226ENST00000560959 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.76■■□□□ 1.23
TPM1-226ENST00000560959 LBHD1Q9BQE6 289 aaPredicted RBP22.76■■□□□ 1.23
TPM1-226ENST00000560959 PAGR1Q9BTK6 254 aa22.76■■□□□ 1.23
TPM1-226ENST00000560959 GPR108Q9NPR9 543 aa22.76■■□□□ 1.23
TPM1-226ENST00000560959 DNAH12Q6ZR08 3092 aa22.76■■□□□ 1.23
TPM1-226ENST00000560959 LAMA2P24043 3122 aaKnown RBP22.75■■□□□ 1.23
TPM1-226ENST00000560959 ZNF316A6NFI3 1004 aaPredicted RBP22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L15C9J2P7 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L13C9JLJ4 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L11C9JVI0 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L18D6R9N7 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L22D6RA61 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L17D6RBQ6 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L19D6RCP7 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L20D6RJB6 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 GDF11O95390 407 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 HOXC6P09630 235 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 USP17L24Q0WX57 530 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 LBX2Q6XYB7 198 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 LPAR1Q92633 364 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 SENP6Q9GZR1 1112 aaPredicted RBP22.75■■□□□ 1.23
TPM1-226ENST00000560959 PALD1Q9ULE6 856 aa22.75■■□□□ 1.23
TPM1-226ENST00000560959 SLC15A5A6NIM6 579 aa22.74■■□□□ 1.23
TPM1-226ENST00000560959 ZNF512BQ96KM6 892 aaPredicted RBP22.74■■□□□ 1.23
TPM1-226ENST00000560959 GUCD1Q96NT3 240 aa22.74■■□□□ 1.23
TPM1-226ENST00000560959 CWC22Q9HCG8 908 aaKnown RBP22.74■■□□□ 1.23
TPM1-226ENST00000560959 DDX20Q9UHI6 824 aaKnown RBP22.74■■□□□ 1.23
TPM1-226ENST00000560959 CNMDO75829 334 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 GNAI2P04899 355 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 PTPREP23469 700 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 RARSP54136 660 aaKnown RBP22.73■■□□□ 1.23
TPM1-226ENST00000560959 USP14P54578 494 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 SHROOM1Q2M3G4 852 aaPredicted RBP22.73■■□□□ 1.23
TPM1-226ENST00000560959 CCDC158Q5M9N0 1113 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 TATDN1Q6P1N9 297 aa22.73■■□□□ 1.23
TPM1-226ENST00000560959 CERS3Q8IU89 383 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms