RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	NBPF11	Q86T75	865 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	DGKH	Q86XP1	1220 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	FLT1	P17948	1338 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	DEXI	O95424	95 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	TROAP	Q12815	778 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	FAM47A	Q5JRC9	791 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	OTUD7B	Q6GQQ9	843 aa		27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.63	■■■□□ 2.01
PIF1-208	ENST00000560444	TFAP4	Q01664	338 aa		27.62	■■■□□ 2.01
PIF1-208	ENST00000560444	KIF23	Q02241	960 aa	Predicted RBP	27.62	■■■□□ 2.01
PIF1-208	ENST00000560444	KRT40	Q6A162	431 aa		27.62	■■■□□ 2.01
PIF1-208	ENST00000560444	SYCE3	A1L190	88 aa		27.61	■■■□□ 2.01
PIF1-208	ENST00000560444	PLCD1	P51178	756 aa		27.61	■■■□□ 2.01
PIF1-208	ENST00000560444	RNF26	Q9BY78	433 aa	Predicted RBP	27.61	■■■□□ 2.01
PIF1-208	ENST00000560444	SLX4	Q8IY92	1834 aa		27.61	■■■□□ 2.01
PIF1-208	ENST00000560444	C16orf86	Q6ZW13	317 aa		27.6	■■■□□ 2.01
PIF1-208	ENST00000560444	DYNLL2	Q96FJ2	89 aa		27.6	■■■□□ 2.01
PIF1-208	ENST00000560444	DBNDD1	Q9H9R9	158 aa		27.6	■■■□□ 2.01
PIF1-208	ENST00000560444	RTEL1	Q9NZ71	1219 aa		27.6	■■■□□ 2.01
PIF1-208	ENST00000560444	SAP30BP	Q9UHR5	308 aa	Known RBP	27.6	■■■□□ 2.01
PIF1-208	ENST00000560444	HDLBP	Q00341	1268 aa	Known RBP	27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	TEKT1	Q969V4	418 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	USP28	Q96RU2	1077 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	MAP3K14	Q99558	947 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	DLEC1	Q9Y238	1755 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	ECE2	O60344	883 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	KIAA2012	Q0VF49	1180 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	TTLL6	Q8N841	843 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	AIFM3	Q96NN9	605 aa		27.59	■■■□□ 2.01
PIF1-208	ENST00000560444	NAV1	Q8NEY1	1877 aa		27.58	■■■□□ 2.01
PIF1-208	ENST00000560444	SNED1	Q8TER0	1413 aa		27.58	■■■□□ 2.01
PIF1-208	ENST00000560444		F8W031	263 aa	Predicted RBP	27.58	■■■□□ 2.01
PIF1-208	ENST00000560444	AKAP17A	Q02040	695 aa	Known RBP	27.58	■■■□□ 2.01
PIF1-208	ENST00000560444	MYSM1	Q5VVJ2	828 aa		27.58	■■■□□ 2.01
PIF1-208	ENST00000560444	ZNF219	Q9P2Y4	722 aa	Predicted RBP	27.58	■■■□□ 2.01
PIF1-208	ENST00000560444	USP17L3	A6NCW0	530 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	USP17L4	A6NCW7	530 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	PRPF3	O43395	683 aa	Known RBP	27.57	■■■□□ 2
PIF1-208	ENST00000560444	TSPY3	P0CV98	308 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	TSPY8	P0CW00	308 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	U2AF2	P26368	475 aa	Known RBP eCLIP	27.57	■■■□□ 2
PIF1-208	ENST00000560444	CDK8	P49336	464 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	RCSD1	Q6JBY9	416 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	USP17L1	Q7RTZ2	530 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	CTCFL	Q8NI51	663 aa	Predicted RBP	27.57	■■■□□ 2
PIF1-208	ENST00000560444	PGBD1	Q96JS3	809 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	GJB4	Q9NTQ9	266 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	POLR3E	Q9NVU0	708 aa		27.57	■■■□□ 2
PIF1-208	ENST00000560444	NMT2	O60551	498 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	RASA1	P20936	1047 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	SLC4A8	Q2Y0W8	1093 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	DACT2	Q5SW24	774 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	RTKN2	Q8IZC4	609 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	MXD3	Q9BW11	206 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	KAT14	Q9H8E8	782 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	IL17RB	Q9NRM6	502 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	USP40	Q9NVE5	1235 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	FUT2	Q10981	343 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	SAFB	Q15424	915 aa	Known RBP eCLIP	27.56	■■■□□ 2
PIF1-208	ENST00000560444	SGIP1	Q9BQI5	828 aa		27.56	■■■□□ 2
PIF1-208	ENST00000560444	KIF28P	B7ZC32	967 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	YEATS4	O95619	227 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	DPEP1	P16444	411 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	KIF5B	P33176	963 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	GNL2	Q13823	731 aa	Known RBP	27.55	■■■□□ 2
PIF1-208	ENST00000560444	TMTC3	Q6ZXV5	915 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	ZDHHC15	Q96MV8	337 aa		27.55	■■■□□ 2
PIF1-208	ENST00000560444	XBP1	P17861	261 aa		27.54	■■■□□ 2
PIF1-208	ENST00000560444	CRK	P46108	304 aa		27.54	■■■□□ 2
PIF1-208	ENST00000560444	CEBPZ	Q03701	1054 aa	Known RBP	27.54	■■■□□ 2
PIF1-208	ENST00000560444	CCDC93	Q567U6	631 aa		27.54	■■■□□ 2
PIF1-208	ENST00000560444	APOBEC3H	Q6NTF7	200 aa	Known RBP	27.54	■■■□□ 2
PIF1-208	ENST00000560444	DDX19A	Q9NUU7	478 aa	Known RBP	27.54	■■■□□ 2
PIF1-208	ENST00000560444	DDX60L	Q5H9U9	1706 aa	Known RBP	27.54	■■■□□ 2
PIF1-208	ENST00000560444	C21orf2	O43822	256 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	WDHD1	O75717	1129 aa	Predicted RBP	27.53	■■■□□ 2
PIF1-208	ENST00000560444	MMP1	P03956	469 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	GUCY1A2	P33402	732 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	NASP	P49321	788 aa	Predicted RBP	27.53	■■■□□ 2
PIF1-208	ENST00000560444	AOC3	Q16853	763 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	CCDC82	Q8N4S0	544 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	KCNG4	Q8TDN1	519 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	KCNQ5	Q9NR82	932 aa		27.53	■■■□□ 2
PIF1-208	ENST00000560444	PPP1R1B	Q9UD71	204 aa	Predicted RBP	27.53	■■■□□ 2
PIF1-208	ENST00000560444	PTGER2	P43116	358 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	SCNN1D	P51172	638 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	TPRN	Q4KMQ1	711 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	LINC00301	Q8NCQ3	95 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	NEDD1	Q8NHV4	660 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	BICD2	Q8TD16	824 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	PSMD1	Q99460	953 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	27.52	■■■□□ 2
PIF1-208	ENST00000560444	VPS33B	Q9H267	617 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	TSPY26P	Q9H489	355 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	MYH15	Q9Y2K3	1946 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	LIG1	P18858	919 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	CDC42EP5	Q6NZY7	148 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	CMTR1	Q8N1G2	835 aa	Known RBP	27.52	■■■□□ 2
PIF1-208	ENST00000560444	SLC44A5	Q8NCS7	719 aa		27.52	■■■□□ 2
PIF1-208	ENST00000560444	FOXP1	Q9H334	677 aa	Predicted RBP	27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms