RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MFSD6Q6ZSS7 791 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.95□□□□□ -0.5
USP3-216ENST00000559873 ZNF444Q8N0Y2 327 aaPredicted RBP11.95□□□□□ -0.5
USP3-216ENST00000559873 DYNLL2Q96FJ2 89 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 TOMM22Q9NS69 142 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 ZBTB21Q9ULJ3 1066 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 SNCAIPQ9Y6H5 919 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 MYH8P13535 1937 aa11.95□□□□□ -0.5
USP3-216ENST00000559873 ORC4O43929 436 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 GDF11O95390 407 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 MCCP23508 829 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 HAND2P61296 217 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 TRDNQ13061 729 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 PPIL2Q13356 520 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 AKNAD1Q5T1N1 836 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 TMEM179Q6ZVK1 233 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 RASAL3Q86YV0 1011 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 SLC44A5Q8NCS7 719 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 STAG1Q8WVM7 1258 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 MAP4K1Q92918 833 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 ZKSCAN4Q969J2 545 aaPredicted RBP11.94□□□□□ -0.5
USP3-216ENST00000559873 CLMNQ96JQ2 1002 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 LSG1Q9H089 658 aaKnown RBP11.94□□□□□ -0.5
USP3-216ENST00000559873 CNNM2Q9H8M5 875 aa11.94□□□□□ -0.5
USP3-216ENST00000559873 RBM8AQ9Y5S9 174 aaKnown RBP11.94□□□□□ -0.5
USP3-216ENST00000559873 USP17L5A8MUK1 530 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 GH2P01242 217 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 TSPY3P0CV98 308 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 TSPY8P0CW00 308 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 ZKSCAN1P17029 563 aaPredicted RBP11.93□□□□□ -0.5
USP3-216ENST00000559873 PTH1RQ03431 593 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 CTDSPL2Q05D32 466 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 GRM1Q13255 1194 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 RALYLQ86SE5 291 aaKnown RBP11.93□□□□□ -0.5
USP3-216ENST00000559873 REM2Q8IYK8 340 aaPredicted RBP11.93□□□□□ -0.5
USP3-216ENST00000559873 STK11IPQ8N1F8 1099 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 ESR2Q92731 530 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 OPTNQ96CV9 577 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 OTUD5Q96G74 571 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 WNK4Q96J92 1243 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 CAPNS2Q96L46 248 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 KRT23Q9C075 422 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 SH2D4AQ9H788 454 aa11.93□□□□□ -0.5
USP3-216ENST00000559873 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.93□□□□□ -0.5
USP3-216ENST00000559873 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP3-216ENST00000559873 PLIN4Q96Q06 1357 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 TSPY2A6NKD2 308 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 PRDM1O75626 825 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 PTPRAP18433 802 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 RASA1P20936 1047 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 EVX2Q03828 476 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 ICA1Q05084 483 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 SREBF2Q12772 1141 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 RAB3GAP1Q15042 981 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 SPRYD7Q5W111 196 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 TBC1D10CQ8IV04 446 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 ARHGEF10LQ9HCE6 1279 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 ATAD5Q96QE3 1844 aa11.92□□□□□ -0.5
USP3-216ENST00000559873 MANSC4A6NHS7 340 aaPredicted RBP11.91□□□□□ -0.5
USP3-216ENST00000559873 RANBP6O60518 1105 aaKnown RBP11.91□□□□□ -0.5
USP3-216ENST00000559873 CYP21A2P08686 494 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 FGRP09769 529 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 SLURP2P0DP57 97 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 AKR1B1P15121 316 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 GTF2A2P52657 109 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 SNAPC2Q13487 334 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 KRT32Q14532 448 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 CCDC178Q5BJE1 867 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 RRP12Q5JTH9 1297 aaKnown RBP11.91□□□□□ -0.5
USP3-216ENST00000559873 CYP4F22Q6NT55 531 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 ZNF280CQ8ND82 737 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 FEZ1Q99689 392 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 KANSL2Q9H9L4 492 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 ZHX2Q9Y6X8 837 aa11.91□□□□□ -0.5
USP3-216ENST00000559873 WDR33Q9C0J8 1336 aaKnown RBP11.9□□□□□ -0.5
USP3-216ENST00000559873 THSD7BQ9C0I4 1608 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 CETPP11597 493 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 MAP2K2P36507 400 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 USP14P54578 494 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 HTRA3P83110 453 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 TFAP4Q01664 338 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 CREB3L3Q68CJ9 461 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 IQCA1Q86XH1 822 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 NEDD1Q8NHV4 660 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 NCOA7Q8NI08 942 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 WDR18Q9BV38 432 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 UPF2Q9HAU5 1272 aaKnown RBP11.9□□□□□ -0.5
USP3-216ENST00000559873 KCNH4Q9UQ05 1017 aa11.9□□□□□ -0.5
USP3-216ENST00000559873 NEDD4P46934 1319 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 TRIM75PA6NK02 468 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 FAM155AB1AL88 458 aaPredicted RBP11.89□□□□□ -0.51
USP3-216ENST00000559873 USP17L10C9JJH3 530 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 SMIM22K7EJ46 135 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 CXCL11O14625 94 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 IRF6O14896 467 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 SLC27A2O14975 620 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 VEGFBP49765 207 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 INHBEP58166 350 aa11.89□□□□□ -0.51
USP3-216ENST00000559873 RRP1BQ14684 758 aaKnown RBP11.89□□□□□ -0.51
USP3-216ENST00000559873 SEPT2Q15019 361 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms