RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ABHD8Q96I13 439 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 ZNF496Q96IT1 587 aaPredicted RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 OSBPL7Q9BZF2 842 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 ZNF408Q9H9D4 720 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 SUGT1Q9Y2Z0 365 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 RIPOR2Q9Y4F9 1068 aa6.31□□□□□ -1.4
LDLR-209ENST00000558528 GPC6Q9Y625 555 aaPredicted RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 KDM6AO15550 1401 aaPredicted RBP6.31□□□□□ -1.4
LDLR-209ENST00000558528 ABCC4O15439 1325 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 KCNQ3O43525 872 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 LILRA1O75019 489 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 HMMRO75330 724 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 CDC45O75419 566 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 ALDH1L1O75891 902 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 GTF2E1P29083 439 aaPredicted RBP6.3□□□□□ -1.4
LDLR-209ENST00000558528 GSTT1P30711 240 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 NR5A1Q13285 461 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 SLC39A6Q13433 755 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 RAB33AQ14088 237 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 KRT24Q2M2I5 525 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 GORABQ5T7V8 394 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 C20orf194Q5TEA3 1177 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 KSR2Q6VAB6 950 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 RELL1Q8IUW5 271 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 DHX37Q8IY37 1157 aaKnown RBP6.3□□□□□ -1.4
LDLR-209ENST00000558528 TMEM57Q8N5G2 664 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 PIGBQ92521 554 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 CNKSR1Q969H4 720 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 SYTL4Q96C24 671 aaPredicted RBP6.3□□□□□ -1.4
LDLR-209ENST00000558528 RNPC3Q96LT9 517 aaKnown RBP6.3□□□□□ -1.4
LDLR-209ENST00000558528 MTRQ99707 1265 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 PHACTR1Q9C0D0 580 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 ARHGEF10LQ9HCE6 1279 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 TMPRSS4Q9NRS4 437 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 KLK14Q9P0G3 267 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 C10orf71Q711Q0 1435 aa6.3□□□□□ -1.4
LDLR-209ENST00000558528 PNPLA7Q6ZV29 1317 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 TCERG1O14776 1098 aaKnown RBP6.29□□□□□ -1.4
LDLR-209ENST00000558528 TNFRSF21O75509 655 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 IL2RAP01589 272 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 SOX9P48436 509 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 NASPP49321 788 aaPredicted RBP6.29□□□□□ -1.4
LDLR-209ENST00000558528 CHMP4BP1P59074 171 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 CLN3Q13286 438 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 HSP90AB3PQ58FF7 597 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 TNNI3KQ59H18 835 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 IER5Q5VY09 327 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 ANKRD13DQ6ZTN6 518 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 ANKS3Q6ZW76 656 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 MARCH10Q8NA82 808 aaPredicted RBP6.29□□□□□ -1.4
LDLR-209ENST00000558528 NKX2-3Q8TAU0 364 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 DNAAF4Q8WXU2 420 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 DEPDC7Q96QD5 511 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 IRF2BPLQ9H1B7 796 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 ATG3Q9NT62 314 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 ZBTB40Q9NUA8 1239 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 KBTBD4Q9NVX7 518 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 SNTG2Q9NY99 539 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 CD2APQ9Y5K6 639 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 HRH3Q9Y5N1 445 aa6.29□□□□□ -1.4
LDLR-209ENST00000558528 IBTKQ9P2D0 1353 aaPredicted RBP6.29□□□□□ -1.4
LDLR-209ENST00000558528 MRC1P22897 1456 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 TUBGCP6Q96RT7 1819 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 A0A087WZG4 1122 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 POTEB3A0JP26 581 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 TGFBR3LH3BV60 316 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 FOXN1O15353 648 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 GNAI2P04899 355 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 TRIM32Q13049 653 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 HDAC1Q13547 482 aaPredicted RBP6.28□□□□□ -1.4
LDLR-209ENST00000558528 ARID5BQ14865 1188 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 POTEBQ6S5H4 581 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 SLC4A10Q6U841 1118 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 EHBP1Q8NDI1 1231 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 PLBD2Q8NHP8 589 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 ZDHHC1Q8WTX9 485 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 APPBP2Q92624 585 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 GCC1Q96CN9 775 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 NIFKQ9BYG3 293 aaKnown RBP6.28□□□□□ -1.4
LDLR-209ENST00000558528 ZFYVE28Q9HCC9 887 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 CHPF2Q9P2E5 772 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 PRKAG3Q9UGI9 489 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 PPM1HQ9ULR3 514 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 HCN4Q9Y3Q4 1203 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 USP16Q9Y5T5 823 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 PXDNLA1KZ92 1463 aa6.28□□□□□ -1.4
LDLR-209ENST00000558528 NHSQ6T4R5 1651 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 PI4KAP2A4QPH2 592 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 KLF4O43474 513 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 PHACTR2O75167 634 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 MICAL2O94851 1124 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 PARNO95453 639 aaKnown RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 S1PR4O95977 384 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 S100BP04271 92 aaPredicted RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 IL6STP40189 918 aaPredicted RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 RASA3Q14644 834 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 PLEKHG6Q3KR16 790 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 PPP1R26Q5T8A7 1209 aaPredicted RBP6.27□□□□□ -1.41
LDLR-209ENST00000558528 KIF6Q6ZMV9 814 aa6.27□□□□□ -1.41
LDLR-209ENST00000558528 COPS6Q7L5N1 327 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms