RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 CEP290O15078 2479 aa19.52■□□□□ 0.72
SCFD1-224ENST00000557713 DOCK3Q8IZD9 2030 aa19.51■□□□□ 0.71
SCFD1-224ENST00000557713 C19orf81C9J6K1 198 aa19.51■□□□□ 0.71
SCFD1-224ENST00000557713 SHROOM1Q2M3G4 852 aaPredicted RBP19.51■□□□□ 0.71
SCFD1-224ENST00000557713 CRACR2BQ8N4Y2 399 aaPredicted RBP19.51■□□□□ 0.71
SCFD1-224ENST00000557713 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.51■□□□□ 0.71
SCFD1-224ENST00000557713 TMOD4Q9NZQ9 345 aa19.51■□□□□ 0.71
SCFD1-224ENST00000557713 CDK5RAP2Q96SN8 1893 aa19.51■□□□□ 0.71
SCFD1-224ENST00000557713 FOCADQ5VW36 1801 aa19.51■□□□□ 0.71
SCFD1-224ENST00000557713 USP17L10C9JJH3 530 aa19.5■□□□□ 0.71
SCFD1-224ENST00000557713 GDF11O95390 407 aa19.5■□□□□ 0.71
SCFD1-224ENST00000557713 CYP7A1P22680 504 aa19.5■□□□□ 0.71
SCFD1-224ENST00000557713 ITPRIPQ8IWB1 547 aa19.5■□□□□ 0.71
SCFD1-224ENST00000557713 FTSJ3Q8IY81 847 aaKnown RBP19.5■□□□□ 0.71
SCFD1-224ENST00000557713 SAP30BPQ9UHR5 308 aaKnown RBP19.5■□□□□ 0.71
SCFD1-224ENST00000557713 ZBTB21Q9ULJ3 1066 aa19.5■□□□□ 0.71
SCFD1-224ENST00000557713 MYO5AQ9Y4I1 1855 aaKnown RBP19.5■□□□□ 0.71
SCFD1-224ENST00000557713 HMGCRP04035 888 aa19.49■□□□□ 0.71
SCFD1-224ENST00000557713 IRX3P78415 501 aaPredicted RBP19.49■□□□□ 0.71
SCFD1-224ENST00000557713 TRIM34Q9BYJ4 488 aa19.49■□□□□ 0.71
SCFD1-224ENST00000557713 RBPJLQ9UBG7 517 aa19.49■□□□□ 0.71
SCFD1-224ENST00000557713 PEX10O60683 326 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 HLA-DOAP06340 250 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 HERVK_113P62684 666 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 HNRNPUQ00839 825 aaKnown RBP eCLIP19.48■□□□□ 0.71
SCFD1-224ENST00000557713 TRIM32Q13049 653 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 PAWRQ96IZ0 340 aaKnown RBP19.48■□□□□ 0.71
SCFD1-224ENST00000557713 TXNRD2Q9NNW7 524 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 EMILIN3Q9NT22 766 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 RPTORQ8N122 1335 aa19.48■□□□□ 0.71
SCFD1-224ENST00000557713 PLXNB2O15031 1838 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 EVI5O60447 810 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 IDH1O75874 414 aaKnown RBP19.47■□□□□ 0.71
SCFD1-224ENST00000557713 TATDN1Q6P1N9 297 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 CEP85Q6P2H3 762 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 ANKLE1Q8NAG6 615 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 MIGA1Q8NAN2 632 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 GPRC5AQ8NFJ5 357 aa19.47■□□□□ 0.71
SCFD1-224ENST00000557713 HMX1Q9NP08 348 aaPredicted RBP19.47■□□□□ 0.71
SCFD1-224ENST00000557713 Q3C1V9 767 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 POTEEQ6S8J3 1075 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 NECAB2Q7Z6G3 386 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 CERS3Q8IU89 383 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 MAGEB6Q8N7X4 407 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 DIS3LQ8TF46 1054 aaKnown RBP19.46■□□□□ 0.71
SCFD1-224ENST00000557713 TRIB2Q92519 343 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 ANTXR1Q9H6X2 564 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 NDUFB9Q9Y6M9 179 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 TRIOBPQ9H2D6 2365 aa19.46■□□□□ 0.71
SCFD1-224ENST00000557713 CYP2B6P20813 491 aa19.45■□□□□ 0.7
SCFD1-224ENST00000557713 TMED8Q6PL24 325 aaPredicted RBP19.45■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L2Q6R6M4 530 aa19.45■□□□□ 0.7
SCFD1-224ENST00000557713 RANBP2P49792 3224 aaKnown RBP19.45■□□□□ 0.7
SCFD1-224ENST00000557713 GH2P01242 217 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 XRCC5P13010 732 aaKnown RBP19.44■□□□□ 0.7
SCFD1-224ENST00000557713 USP5P45974 858 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 MNX1P50219 401 aaPredicted RBP19.44■□□□□ 0.7
SCFD1-224ENST00000557713 MAP3K21Q5TCX8 1036 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 USP6NLQ92738 828 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 NUDT12Q9BQG2 462 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 EHD4Q9H223 541 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 EXOC6BQ9Y2D4 811 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 SZT2Q5T011 3432 aa19.44■□□□□ 0.7
SCFD1-224ENST00000557713 MAPK4P31152 587 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 ERVK-9P63128 1117 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 ERVK-24P63145 666 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 MAP3K12Q12852 859 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 ERC1Q8IUD2 1116 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 GTF3C2Q8WUA4 911 aaPredicted RBP19.43■□□□□ 0.7
SCFD1-224ENST00000557713 C12orf42Q96LP6 360 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 PORCNQ9H237 461 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 SERPINB13Q9UIV8 391 aa19.43■□□□□ 0.7
SCFD1-224ENST00000557713 A0A1W2PPC1 479 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 TTC6Q86TZ1 520 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 AACSQ86V21 672 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 MIER1Q8N108 512 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 SOCS4Q8WXH5 440 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 RIOK1Q9BRS2 568 aaKnown RBP19.42■□□□□ 0.7
SCFD1-224ENST00000557713 OGDHLQ9ULD0 1010 aa19.42■□□□□ 0.7
SCFD1-224ENST00000557713 MYH1P12882 1939 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 CERKLQ49MI3 558 aaPredicted RBP19.41■□□□□ 0.7
SCFD1-224ENST00000557713 MORN1Q5T089 497 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 TRMT44Q8IYL2 757 aaKnown RBP19.41■□□□□ 0.7
SCFD1-224ENST00000557713 PANK1Q8TE04 598 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 PAGR1Q9BTK6 254 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 NBPF3Q9H094 633 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 STAP2Q9UGK3 403 aa19.41■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L15C9J2P7 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L13C9JLJ4 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L11C9JVI0 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L18D6R9N7 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L22D6RA61 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L17D6RBQ6 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L19D6RCP7 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L20D6RJB6 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 CNMDO75829 334 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 PRKAR2AP13861 404 aaKnown RBP19.4■□□□□ 0.7
SCFD1-224ENST00000557713 PLCD1P51178 756 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 USP17L24Q0WX57 530 aa19.4■□□□□ 0.7
SCFD1-224ENST00000557713 PDE3AQ14432 1141 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms