RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 P2RX7Q99572 595 aaKnown RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 NUDT12Q9BQG2 462 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 TBC1D2Q9BYX2 928 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 DNAJC18Q9H819 358 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 HMG20BQ9P0W2 317 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 XRCC5P13010 732 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 ZKSCAN1P17029 563 aaPredicted RBP10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 BACE1P56817 501 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 HERVK_113P62684 666 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 TFCP2Q12800 502 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 LHX8Q68G74 356 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 TEX11Q8IYF3 940 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 SH3RF3Q8TEJ3 882 aaPredicted RBP10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 USP6NLQ92738 828 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 MEIS3Q99687 375 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 WDR18Q9BV38 432 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 PORCNQ9H237 461 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 AS3MTQ9HBK9 375 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 SMC4Q9NTJ3 1288 aa10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 HERC5Q9UII4 1024 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-214ENST00000557507 E9PSI1 815 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 HOXA7P31268 230 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 ERVK-9P63128 1117 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 ERVK-24P63145 666 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 MVPQ14764 893 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 Q3C1V9 767 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 ALDH1L2Q3SY69 923 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 GPR142Q7Z601 462 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 SPATA5Q8NB90 893 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 GPRC5AQ8NFJ5 357 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 FAM161BQ96MY7 647 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 APBA2Q99767 749 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 TMOD4Q9NZQ9 345 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 RBPJLQ9UBG7 517 aa10.1□□□□□ -0.79
CCDC88C-214ENST00000557507 BAZ2AQ9UIF9 1905 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 GBF1Q92538 1859 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 POTEB2H3BUK9 544 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 GDF11O95390 407 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 MAP4K4O95819 1239 aaPredicted RBP10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 ARID4AP29374 1257 aaPredicted RBP10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 MAPK4P31152 587 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 RGS2P41220 211 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 MCAMP43121 646 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 GSTO1P78417 241 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 SLFN5Q08AF3 891 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 PDE3AQ14432 1141 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 MORN1Q5T089 497 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 MIER1Q8N108 512 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 PAGR1Q9BTK6 254 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 RAI14Q9P0K7 980 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 ZBTB21Q9ULJ3 1066 aa10.09□□□□□ -0.79
CCDC88C-214ENST00000557507 FLT1P17948 1338 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 MCM3APO60318 1980 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 SRGAP3O43295 1099 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 LDHCP07864 332 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 ASNSP08243 561 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 FAM109BQ6ICB4 259 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 PLEKHH3Q7Z736 793 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 ADGRA1Q86SQ6 560 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 MAPKAPK5Q8IW41 473 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 TRMT44Q8IYL2 757 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 CDCA7LQ96GN5 454 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 NEUROD6Q96NK8 337 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 AATFQ9NY61 560 aaKnown RBP eCLIP10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 FLRT1Q9NZU1 646 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 PI4KBQ9UBF8 816 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 NOB1Q9ULX3 412 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 AKAP2Q9Y2D5 859 aa10.08□□□□□ -0.8
CCDC88C-214ENST00000557507 MYH7P12883 1935 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 C19orf81C9J6K1 198 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 USP17L10C9JJH3 530 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 CNMDO75829 334 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 MTX1Q13505 466 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 METTL16Q86W50 562 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 TGFBRAP1Q8WUH2 860 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 SENP6Q9GZR1 1112 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 DHX36Q9H2U1 1008 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 EMILIN3Q9NT22 766 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 NDUFB9Q9Y6M9 179 aa10.07□□□□□ -0.8
CCDC88C-214ENST00000557507 ATN1P54259 1190 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 MAP2K5Q13163 448 aa10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 GTF3C2Q8WUA4 911 aaPredicted RBP10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 API5Q9BZZ5 524 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 SNRKQ9NRH2 765 aa10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 LRP2BPQ9P2M1 347 aa10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 SAP30BPQ9UHR5 308 aaKnown RBP10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 PALD1Q9ULE6 856 aa10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 MUC3AQ02505 3323 aa10.06□□□□□ -0.8
CCDC88C-214ENST00000557507 CCER2I3L3R5 266 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 RTP1P59025 263 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 ZYXQ15942 572 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 GORABQ5T7V8 394 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 ZNF697Q5TEC3 545 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 NAA16Q6N069 864 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 USP17L2Q6R6M4 530 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 CCAR1Q8IX12 1150 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 CRACR2BQ8N4Y2 399 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 TRPV1Q8NER1 839 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 NPLOC4Q8TAT6 608 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms