RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 Q3C1V9 767 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 POTEEQ6S8J3 1075 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 ZNF280CQ8ND82 737 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 PANK1Q8TE04 598 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 BADQ92934 168 aa15.35■□□□□ 0.05
SHMT2-230ENST00000557427 GNAI3P08754 354 aa15.34■□□□□ 0.05
SHMT2-230ENST00000557427 SH3D19Q5HYK7 790 aa15.34■□□□□ 0.05
SHMT2-230ENST00000557427 MORN1Q5T089 497 aa15.34■□□□□ 0.05
SHMT2-230ENST00000557427 SOCS4Q8WXH5 440 aa15.34■□□□□ 0.05
SHMT2-230ENST00000557427 P2RX7Q99572 595 aaKnown RBP15.34■□□□□ 0.05
SHMT2-230ENST00000557427 PA2G4Q9UQ80 394 aaKnown RBP15.34■□□□□ 0.05
SHMT2-230ENST00000557427 MYH13Q9UKX3 1938 aa15.33■□□□□ 0.05
SHMT2-230ENST00000557427 LDHBP07195 334 aaKnown RBP15.33■□□□□ 0.04
SHMT2-230ENST00000557427 IFIT1P09914 478 aaKnown RBP15.33■□□□□ 0.04
SHMT2-230ENST00000557427 PUM3Q15397 648 aaKnown RBP15.33■□□□□ 0.04
SHMT2-230ENST00000557427 ATG9AQ7Z3C6 839 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 TRMT44Q8IYL2 757 aaKnown RBP15.33■□□□□ 0.04
SHMT2-230ENST00000557427 TMEM57Q8N5G2 664 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 PORCNQ9H237 461 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 FLRT1Q9NZU1 646 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 RBPJLQ9UBG7 517 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 PRKAG2Q9UGJ0 569 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 COG6Q9Y2V7 657 aa15.33■□□□□ 0.04
SHMT2-230ENST00000557427 TBC1D12O60347 775 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 PABPC4Q13310 644 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHMT2-230ENST00000557427 PICALMQ13492 652 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 GPR142Q7Z601 462 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 SH3RF1Q7Z6J0 888 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 GPRC5AQ8NFJ5 357 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 CEP126Q9P2H0 1117 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 ATP11BQ9Y2G3 1177 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 GAKO14976 1311 aa15.32■□□□□ 0.04
SHMT2-230ENST00000557427 TRIM43BA6NCK2 446 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 SRGAP3O43295 1099 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 GNAI2P04899 355 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 RLBP1P12271 317 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 EPHB4P54760 987 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 MVPQ14764 893 aaKnown RBP15.31■□□□□ 0.04
SHMT2-230ENST00000557427 TRIM43Q96BQ3 446 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-230ENST00000557427 SALL1Q9NSC2 1324 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 RLFQ13129 1914 aa15.31■□□□□ 0.04
SHMT2-230ENST00000557427 BDP1A6H8Y1 2624 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 DNM1LO00429 736 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 SLC5A1P13866 664 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 ITGB8P26012 769 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 HOXA7P31268 230 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 RGS2P41220 211 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 HERVK_113P62684 666 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 SLC39A5Q6ZMH5 540 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 FTSJ3Q8IY81 847 aaKnown RBP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 ADAMTS19Q8TE59 1207 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 LPAR1Q92633 364 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 ASB2Q96Q27 587 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 APBA2Q99767 749 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 OSBPL5Q9H0X9 879 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 PRDM5Q9NQX1 630 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 DDX20Q9UHI6 824 aaKnown RBP15.3■□□□□ 0.04
SHMT2-230ENST00000557427 MYH2Q9UKX2 1941 aa15.3■□□□□ 0.04
SHMT2-230ENST00000557427 CIAO1O76071 339 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 MAPK4P31152 587 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 CAP2P40123 477 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 IL15P40933 162 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-230ENST00000557427 TRPV1Q8NER1 839 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 ATXN2LQ8WWM7 1075 aaKnown RBP15.29■□□□□ 0.04
SHMT2-230ENST00000557427 LPIN2Q92539 896 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 COPRSQ9NQ92 184 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 PDLIM7Q9NR12 457 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 NCOR1O75376 2440 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 ATAD5Q96QE3 1844 aa15.29■□□□□ 0.04
SHMT2-230ENST00000557427 USP17L5A8MUK1 530 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 RHBDL3P58872 404 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 ERVK-9P63128 1117 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 ERVK-24P63145 666 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 IRX3P78415 501 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-230ENST00000557427 JAG1P78504 1218 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 MTMR2Q13614 643 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 SNX17Q15036 470 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 TRIM60Q495X7 471 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 GJC2Q5T442 439 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-230ENST00000557427 PLEKHH3Q7Z736 793 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 ITPRIPQ8IWB1 547 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 PPM1EQ8WY54 764 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 FAM163AQ96GL9 167 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-230ENST00000557427 FBXO3Q9UK99 471 aa15.28■□□□□ 0.04
SHMT2-230ENST00000557427 SYNGAP1Q96PV0 1343 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 IGHA2P01877 340 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 BTDP43251 543 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 TIMM10P62072 90 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 MAP2K5Q13163 448 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 ATP2B3Q16720 1220 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 UHRF1Q96T88 793 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-230ENST00000557427 TBC1D2Q9BYX2 928 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 C1orf115Q9H7X2 142 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 DDX19BQ9UMR2 479 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 NDUFB9Q9Y6M9 179 aa15.27■□□□□ 0.04
SHMT2-230ENST00000557427 DNAJB2P25686 324 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 CNGA1P29973 690 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 PHKA1P46020 1223 aa15.26■□□□□ 0.03
SHMT2-230ENST00000557427 BACE1P56817 501 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms