RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TSPY2A6NKD2 308 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 KIF20AO95235 890 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 YEATS4O95619 227 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 POLR3DP05423 398 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-229ENST00000557348 GTF2IP78347 998 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 GNL2Q13823 731 aaKnown RBP14.64□□□□□ -0.07
SHMT2-229ENST00000557348 DGKHQ86XP1 1220 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 MYRIPQ8NFW9 859 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 KCNG4Q8TDN1 519 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 MRIQ9BWK5 157 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 INCENPQ9NQS7 918 aa14.64□□□□□ -0.07
SHMT2-229ENST00000557348 FAM217BQ9NTX9 383 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-229ENST00000557348 KIF5BP33176 963 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 HHIPL2Q6UWX4 724 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 ANKS1AQ92625 1134 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 ZKSCAN3Q9BRR0 538 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 POLR3EQ9NVU0 708 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 RTEL1Q9NZ71 1219 aa14.63□□□□□ -0.07
SHMT2-229ENST00000557348 CYP2D7A0A087X1C5 515 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 SYCE3A1L190 88 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 HDLBPQ00341 1268 aaKnown RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 KIF23Q02241 960 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 TAF3Q5VWG9 929 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 KRT40Q6A162 431 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 ZNF444Q8N0Y2 327 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 CRACR2BQ8N4Y2 399 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 CTCFLQ8NI51 663 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 TGFBRAP1Q8WUH2 860 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 SLC26A6Q9BXS9 759 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 RBSNQ9H1K0 784 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 TSPY26PQ9H489 355 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 MKNK2Q9HBH9 465 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 SENP2Q9HC62 589 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.62□□□□□ -0.07
SHMT2-229ENST00000557348 NAV1Q8NEY1 1877 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 C10orf71Q711Q0 1435 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 DLEC1Q9Y238 1755 aa14.62□□□□□ -0.07
SHMT2-229ENST00000557348 RIMBP2O15034 1052 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 USP17L8P0C7I0 530 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 GNAQP50148 359 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 STRIP1Q5VSL9 837 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 MYSM1Q5VVJ2 828 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 JMYQ8N9B5 988 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 BICD2Q8TD16 824 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 NUP133Q8WUM0 1156 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 MYL10Q9BUA6 226 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 FAM13BQ9NYF5 915 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 TFIP11Q9UBB9 837 aaKnown RBP14.61□□□□□ -0.07
SHMT2-229ENST00000557348 RXRAP19793 462 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 U2AF2P26368 475 aaKnown RBP eCLIP14.61□□□□□ -0.074e-8■■□□□ 14.1
SHMT2-229ENST00000557348 RHBDL3P58872 404 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 PPP4R3BQ5MIZ7 849 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 FAM173BQ6P4H8 233 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 C16orf86Q6ZW13 317 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 RAB11FIP4Q86YS3 637 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 FAM177A1Q8N128 213 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-229ENST00000557348 NKX2-3Q8TAU0 364 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 TEKT1Q969V4 418 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 DAGLAQ9Y4D2 1042 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 FLT1P17948 1338 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 MYO3BQ8WXR4 1341 aa14.61□□□□□ -0.07
SHMT2-229ENST00000557348 BAZ2AQ9UIF9 1905 aaKnown RBP14.6□□□□□ -0.07
SHMT2-229ENST00000557348 MYH2Q9UKX2 1941 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 PRPF3O43395 683 aaKnown RBP14.6□□□□□ -0.07
SHMT2-229ENST00000557348 DTNBO60941 627 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 PRDM1O75626 825 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 FOSBP53539 338 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 TROAPQ12815 778 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 GRIK5Q16478 980 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 CCDC144CPQ8IYA2 1237 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 STK11IPQ8N1F8 1099 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 PHKBQ93100 1093 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 NUP62CLQ9H1M0 184 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 VPS33BQ9H267 617 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 KAT14Q9H8E8 782 aa14.6□□□□□ -0.07
SHMT2-229ENST00000557348 A0A1W2PQ27 194 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 A0A1W2PQ64 194 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 A0A1W2PQD8 194 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 PSDA5PKW4 1024 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-229ENST00000557348 CTAGE5O15320 804 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 MMP1P03956 469 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 TSPY3P0CV98 308 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 TSPY8P0CW00 308 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 GUCY1B3Q02153 619 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 DMTNQ08495 405 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 SOGA3Q5TF21 947 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 CCDC73Q6ZRK6 1079 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 NBPF11Q86T75 865 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 SLC51AQ86UW1 340 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 MAPKAPK5Q8IW41 473 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 USP28Q96RU2 1077 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 FOXP1Q9H334 677 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-229ENST00000557348 BRMS1Q9HCU9 246 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 TTF2Q9UNY4 1162 aaKnown RBP14.59□□□□□ -0.07
SHMT2-229ENST00000557348 DDX60LQ5H9U9 1706 aaKnown RBP14.59□□□□□ -0.07
SHMT2-229ENST00000557348 TCHHQ07283 1943 aa14.59□□□□□ -0.07
SHMT2-229ENST00000557348 CYP2D6P10635 497 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 TFAP4Q01664 338 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 STK38Q15208 465 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 SF3A1Q15459 793 aaKnown RBP14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms