RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SHMT1P34896 483 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 MFAP1P55081 439 aaKnown RBP16.24■□□□□ 0.19
SHMT2-228ENST00000557302 CCL15Q16663 113 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 CERKLQ49MI3 558 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-228ENST00000557302 SBK1Q52WX2 424 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 CWC27Q6UX04 472 aaKnown RBP16.24■□□□□ 0.19
SHMT2-228ENST00000557302 SKAP1Q86WV1 359 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 IFNL3Q8IZI9 196 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 DYNLL2Q96FJ2 89 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 NAPBQ9H115 298 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-228ENST00000557302 KCNH4Q9UQ05 1017 aa16.24■□□□□ 0.19
SHMT2-228ENST00000557302 CCDC171Q6TFL3 1326 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 DOCK1Q14185 1865 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 TESPA1A2RU30 521 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-228ENST00000557302 MINDY4BA8MYZ0 360 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 CXCL11O14625 94 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 FOXN1O15353 648 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 OTUD7BQ6GQQ9 843 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 ZNF589Q86UQ0 364 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-228ENST00000557302 CCDC84Q86UT8 332 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-228ENST00000557302 IFNL1Q8IU54 200 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 SLC44A5Q8NCS7 719 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 BRI3BPQ8WY22 251 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 TBC1D2Q9BYX2 928 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 RNF186Q9NXI6 227 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 SAGE1Q9NXZ1 904 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 ZBTB21Q9ULJ3 1066 aa16.23■□□□□ 0.19
SHMT2-228ENST00000557302 BAZ2AQ9UIF9 1905 aaKnown RBP16.23■□□□□ 0.19
SHMT2-228ENST00000557302 USP17L5A8MUK1 530 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 FOXP2O15409 715 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 TRPA1O75762 1119 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 ALDH1A1P00352 501 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 GH2P01242 217 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 CTCFP49711 727 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-228ENST00000557302 JAG1P78504 1218 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 ABCB5Q2M3G0 1257 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 VPS53Q5VIR6 699 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 C16orf86Q6ZW13 317 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 TNS4Q8IZW8 715 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 AS3MTQ9HBK9 375 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 CABP5Q9NP86 173 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 AFG3L2Q9Y4W6 797 aa16.22■□□□□ 0.19
SHMT2-228ENST00000557302 TRIM75PA6NK02 468 aa16.21■□□□□ 0.19
SHMT2-228ENST00000557302 SMIM22K7EJ46 135 aa16.21■□□□□ 0.19
SHMT2-228ENST00000557302 IGF2BP3O00425 579 aaKnown RBP eCLIP16.21■□□□□ 0.19
SHMT2-228ENST00000557302 CDK8P49336 464 aa16.21■□□□□ 0.19
SHMT2-228ENST00000557302 SHROOM1Q2M3G4 852 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-228ENST00000557302 ZNF280CQ8ND82 737 aa16.21■□□□□ 0.19
SHMT2-228ENST00000557302 ROBO3Q96MS0 1386 aa16.21■□□□□ 0.19
SHMT2-228ENST00000557302 MPHOSPH10O00566 681 aaKnown RBP16.2■□□□□ 0.18
SHMT2-228ENST00000557302 HSPD1P10809 573 aaKnown RBP16.2■□□□□ 0.18
SHMT2-228ENST00000557302 HSPA8P11142 646 aaKnown RBP16.2■□□□□ 0.18
SHMT2-228ENST00000557302 CHMLP26374 656 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 SPP2Q13103 211 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 ALX1Q15699 326 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 BMP2KLQ5H9B9 411 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 RUFY2Q8WXA3 655 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 PTPN18Q99952 460 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 WDR18Q9BV38 432 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 TSKSQ9UJT2 592 aa16.2■□□□□ 0.18
SHMT2-228ENST00000557302 RAD50Q92878 1312 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 LAMB1P07942 1786 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 A0A0G2JLL6 359 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-228ENST00000557302 SLC3A2P08195 630 aaKnown RBP16.19■□□□□ 0.18
SHMT2-228ENST00000557302 PPARAQ07869 468 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 RAB3GAP1Q15042 981 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 FASTKD5Q7L8L6 764 aaKnown RBP16.19■□□□□ 0.18
SHMT2-228ENST00000557302 PRRT2Q7Z6L0 340 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-228ENST00000557302 CCDC17Q96LX7 622 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 MKNK2Q9HBH9 465 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 ZNF287Q9HBT7 754 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 ZMYM6O95789 1325 aa16.19■□□□□ 0.18
SHMT2-228ENST00000557302 ATAD5Q96QE3 1844 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 BTBD19C9JJ37 291 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 FGAP02671 866 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 LBX1P52954 281 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 MOGSQ13724 837 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 GADL1Q6ZQY3 521 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 TMEM179Q6ZVK1 233 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 ANKRD23Q86SG2 305 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 STK11IPQ8N1F8 1099 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 FAM43AQ8N2R8 423 aa16.18■□□□□ 0.18
SHMT2-228ENST00000557302 ZCCHC17Q9NP64 241 aaKnown RBP16.18■□□□□ 0.18
SHMT2-228ENST00000557302 AKR1B1P15121 316 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 PDE4BQ07343 736 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 MTMR2Q13614 643 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 SEPT2Q15019 361 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 CFHR5Q9BXR6 569 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 PRDM10Q9NQV6 1147 aa16.17■□□□□ 0.18
SHMT2-228ENST00000557302 USP17L10C9JJH3 530 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 TBC1D8O95759 1140 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 RASA1P20936 1047 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 GUCY1A2P33402 732 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 HMGCS2P54868 508 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 BACE1P56817 501 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 TAF1CQ15572 869 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-228ENST00000557302 PROCA1Q8NCQ7 364 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-228ENST00000557302 DSCC1Q9BVC3 393 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 IL25Q9H293 177 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms