RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LACTB2Q53H82 288 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-226ENST00000556825 CCT8L2Q96SF2 557 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 SELENOOQ9BVL4 669 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 BAIAP2L1Q9UHR4 511 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 PHF24Q9UPV7 400 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 MYO3AQ8NEV4 1616 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 NPHP4O75161 1426 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-226ENST00000556825 IKBKBO14920 756 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 CCDC175P0C221 793 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 CNGA1P29973 690 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 FAM160A1Q05DH4 1040 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 DPCR1Q3MIW9 517 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 SENP2Q9HC62 589 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 NOP53Q9NZM5 478 aaKnown RBP15.51■□□□□ 0.07
SHMT2-226ENST00000556825 WDR35Q9P2L0 1181 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 MAPK8IP1Q9UQF2 711 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 TUBGCP6Q96RT7 1819 aa15.51■□□□□ 0.07
SHMT2-226ENST00000556825 STXBP3O00186 592 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 Q4G0T1 1027 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 SPECC1Q5M775 1068 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 NLRP14Q86W24 1093 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 SYCP3Q8IZU3 236 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 TEX9Q8N6V9 391 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 NECAB1Q8N987 351 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 MYCBPAPQ8TBZ2 947 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 TEKT4Q8WW24 435 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 IL25Q9H293 177 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 ZWILCHQ9H900 591 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 INCENPQ9NQS7 918 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 SPATA7Q9P0W8 599 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 MYO5BQ9ULV0 1848 aa15.5■□□□□ 0.07
SHMT2-226ENST00000556825 KDM4FA0A1W2PPD8 638 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 MAP4K4O95819 1239 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-226ENST00000556825 SCTRP47872 440 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 TMEM62Q0P6H9 643 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 TBX2Q13207 712 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-226ENST00000556825 PTGISQ16647 500 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 ZNF569Q5MCW4 686 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 ARL10Q8N8L6 244 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 DPF2Q92785 391 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 L3MBTL3Q96JM7 780 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-226ENST00000556825 OSBPL7Q9BZF2 842 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 UNC45AQ9H3U1 944 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 TMOD4Q9NZQ9 345 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 NPTXRO95502 500 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 FAM107AO95990 144 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 CPA1P15085 419 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 RPL13P26373 211 aaKnown RBP15.49■□□□□ 0.07
SHMT2-226ENST00000556825 LMOD1P29536 600 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-226ENST00000556825 ARHGEF25Q86VW2 580 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 DESI2Q9BSY9 194 aa15.49■□□□□ 0.07
SHMT2-226ENST00000556825 KIAA0232Q92628 1395 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 GPR75-ASB3A0A0A6YYF3 556 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 ZNF189O75820 626 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 SERPINC1P01008 464 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 ALDH3A1P30838 453 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 GNAQP50148 359 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 INHBCP55103 352 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 HDLBPQ00341 1268 aaKnown RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 TMED1Q13445 227 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 TSHZ3Q63HK5 1081 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 LARP1Q6PKG0 1096 aaKnown RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 MTRQ99707 1265 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 PCMTD2Q9NV79 361 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 FANCLQ9NW38 375 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 ASB3Q9Y575 518 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 E2F6O75461 281 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 RESTQ13127 1097 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 EMC10Q5UCC4 262 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 MSL1Q68DK7 614 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 CCNI2Q6ZMN8 369 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 KDM7AQ6ZMT4 941 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 GDAP1L1Q96MZ0 367 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 NAPGQ99747 312 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 OSBPL1AQ9BXW6 950 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 UBE2OQ9C0C9 1292 aaKnown RBP15.48■□□□□ 0.07
SHMT2-226ENST00000556825 LZTFL1Q9NQ48 299 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 KIAA1468Q9P260 1216 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 RCOR1Q9UKL0 485 aa15.48■□□□□ 0.07
SHMT2-226ENST00000556825 NSD2O96028 1365 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 SBNO2Q9Y2G9 1366 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 LRRD1A4D1F6 860 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 PPP1R37O75864 691 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 TFRCP02786 760 aaKnown RBP15.47■□□□□ 0.07
SHMT2-226ENST00000556825 ATP1A3P13637 1013 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 ABL2P42684 1182 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 NLRP12P59046 1061 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 PABPC4Q13310 644 aaKnown RBP eCLIP15.47■□□□□ 0.078e-7■■■■■ 32.8
SHMT2-226ENST00000556825 TMEM132EQ6IEE7 984 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 P3H4Q92791 437 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.47■□□□□ 0.075e-8■■■□□ 18.8
SHMT2-226ENST00000556825 TM6SF1Q9BZW5 370 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 LSG1Q9H089 658 aaKnown RBP15.47■□□□□ 0.07
SHMT2-226ENST00000556825 HSD3B7Q9H2F3 369 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 C2CD2Q9Y426 696 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 NEXMIFQ5QGS0 1516 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 NSD3Q9BZ95 1437 aa15.47■□□□□ 0.07
SHMT2-226ENST00000556825 CLTCQ00610 1675 aaKnown RBP15.47■□□□□ 0.07
SHMT2-226ENST00000556825 DPPA5A6NC42 116 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms