RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ASNSP08243 561 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 GABPAQ06546 454 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 LRRFIP1Q32MZ4 808 aaKnown RBP16.51■□□□□ 0.23
SHMT2-219ENST00000555563 TATDN1Q6P1N9 297 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 ZFYVE28Q9HCC9 887 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 ZBTB21Q9ULJ3 1066 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 SLC4A4Q9Y6R1 1079 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 USP17L5A8MUK1 530 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 PDHXO00330 501 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 SHMT1P34896 483 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 GPAT2Q6NUI2 795 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 GADL1Q6ZQY3 521 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 ZNF280CQ8ND82 737 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 STRBPQ96SI9 672 aaKnown RBP16.5■□□□□ 0.23
SHMT2-219ENST00000555563 TBC1D2Q9BYX2 928 aa16.5■□□□□ 0.23
SHMT2-219ENST00000555563 CYP2D7A0A087X1C5 515 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 GPAA1O43292 621 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 GH2P01242 217 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 SPP2Q13103 211 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 FASTKD5Q7L8L6 764 aaKnown RBP16.49■□□□□ 0.23
SHMT2-219ENST00000555563 CTU1Q7Z7A3 348 aaKnown RBP16.49■□□□□ 0.23
SHMT2-219ENST00000555563 SLC44A5Q8NCS7 719 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 DDRGK1Q96HY6 314 aa16.49■□□□□ 0.23
SHMT2-219ENST00000555563 SMIM22K7EJ46 135 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 TLR2O60603 784 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 MTMR2Q13614 643 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 PLEKHM2Q8IWE5 1019 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 EVI5LQ96CN4 794 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 DYNLL2Q96FJ2 89 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 AS3MTQ9HBK9 375 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 GINM1Q9NU53 330 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 MYH8P13535 1937 aa16.48■□□□□ 0.23
SHMT2-219ENST00000555563 ADGRA2Q96PE1 1338 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 ZSWIM8A7E2V4 1837 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 USP17L12C9JPN9 530 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 USP17L21D6R901 530 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 HMGCS2P54868 508 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 CERKLQ49MI3 558 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-219ENST00000555563 ZMYM1Q5SVZ6 1142 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 C12orf60Q5U649 245 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 CD99L2Q8TCZ2 262 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 SEC62Q99442 399 aaKnown RBP16.47■□□□□ 0.23
SHMT2-219ENST00000555563 PARK7Q99497 189 aaKnown RBP16.47■□□□□ 0.23
SHMT2-219ENST00000555563 WDR18Q9BV38 432 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 EPB41L4AQ9HCS5 686 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-219ENST00000555563 AGTPBP1Q9UPW5 1226 aa16.47■□□□□ 0.23
SHMT2-219ENST00000555563 GSG1L2A8MUP6 293 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 CYP2C8P10632 490 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 CAP1Q01518 475 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 SP3Q02447 781 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 ABCB5Q2M3G0 1257 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 TREML2Q5T2D2 321 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 CTR9Q6PD62 1173 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 AMOTL1Q8IY63 956 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 PROCA1Q8NCQ7 364 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-219ENST00000555563 ERO1AQ96HE7 468 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 OSBPL3Q9H4L5 887 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 ARPP21Q9UBL0 812 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-219ENST00000555563 SWAP70Q9UH65 585 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 SLC45A1Q9Y2W3 748 aa16.46■□□□□ 0.23
SHMT2-219ENST00000555563 GNAT2P19087 354 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 BACE1P56817 501 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 RAB3GAP1Q15042 981 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 SH3D19Q5HYK7 790 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 GIMAP6Q6P9H5 292 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 CPA4Q9UI42 421 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 TAOK2Q9UL54 1235 aa16.45■□□□□ 0.22
SHMT2-219ENST00000555563 ROBO3Q96MS0 1386 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 TRIM6-TRIM34B2RNG4 842 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 GUCY1A2P33402 732 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 CCDC129Q6ZRS4 1044 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 C16orf86Q6ZW13 317 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 OTOP1Q7RTM1 612 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 TRIM17Q9Y577 477 aa16.44■□□□□ 0.22
SHMT2-219ENST00000555563 MPHOSPH10O00566 681 aaKnown RBP16.43■□□□□ 0.22
SHMT2-219ENST00000555563 PDE4AP27815 886 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 TDO2P48775 406 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 CDK8P49336 464 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 C17orf99Q6UX52 265 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 RILPL2Q969X0 211 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 FEZ1Q99689 392 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 CABP5Q9NP86 173 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 TMOD4Q9NZQ9 345 aa16.43■□□□□ 0.22
SHMT2-219ENST00000555563 A0A0D9SFI3 127 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 C19orf81C9J6K1 198 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 USP17L10C9JJH3 530 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 FOXP2O15409 715 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 APPP05067 770 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 AKR1B1P15121 316 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 LACTBP83111 547 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-219ENST00000555563 SEPT2Q15019 361 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 PKN2Q16513 984 aaKnown RBP16.42■□□□□ 0.22
SHMT2-219ENST00000555563 SBK1Q52WX2 424 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 SMCR8Q8TEV9 937 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-219ENST00000555563 FAM227BQ96M60 508 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 ARHGAP39Q9C0H5 1083 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 PCDH10Q9P2E7 1040 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 PNMA3Q9UL41 463 aa16.42■□□□□ 0.22
SHMT2-219ENST00000555563 MINDY4BA8MYZ0 360 aa16.41■□□□□ 0.22
SHMT2-219ENST00000555563 PATL2C9JE40 543 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms