RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 SMC5Q8IY18 1101 aa24.72■■□□□ 1.55
VTI1B-205ENST00000555543 RWDD1Q9H446 243 aaPredicted RBP24.72■■□□□ 1.55
VTI1B-205ENST00000555543 ZBTB47Q9UFB7 747 aaPredicted RBP24.72■■□□□ 1.55
VTI1B-205ENST00000555543 TRIM17Q9Y577 477 aa24.72■■□□□ 1.55
VTI1B-205ENST00000555543 BAZ2AQ9UIF9 1905 aaKnown RBP24.71■■□□□ 1.55
VTI1B-205ENST00000555543 CCDC85CA6NKD9 419 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 CYP2C8P10632 490 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 SHMT1P34896 483 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 GABPAQ06546 454 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 PKN2Q16513 984 aaKnown RBP24.71■■□□□ 1.55
VTI1B-205ENST00000555543 TREML2Q5T2D2 321 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 OSBP2Q969R2 916 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 TBC1D2Q9BYX2 928 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 CPA4Q9UI42 421 aa24.71■■□□□ 1.55
VTI1B-205ENST00000555543 SMIM22K7EJ46 135 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 RNF113AO15541 343 aaKnown RBP24.7■■□□□ 1.54
VTI1B-205ENST00000555543 GH2P01242 217 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 HMGCS2P54868 508 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 C17orf99Q6UX52 265 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 PARK7Q99497 189 aaKnown RBP24.7■■□□□ 1.54
VTI1B-205ENST00000555543 WDR18Q9BV38 432 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 ATP8A2Q9NTI2 1148 aa24.7■■□□□ 1.54
VTI1B-205ENST00000555543 FBXO46Q6PJ61 603 aaPredicted RBP24.69■■□□□ 1.54
VTI1B-205ENST00000555543 APPBP2Q92624 585 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 LNPKQ9C0E8 428 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 AS3MTQ9HBK9 375 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 GINM1Q9NU53 330 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 STAP2Q9UGK3 403 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 AGTPBP1Q9UPW5 1226 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 HPS5Q9UPZ3 1129 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 SLC4A4Q9Y6R1 1079 aa24.69■■□□□ 1.54
VTI1B-205ENST00000555543 CYP2D7A0A087X1C5 515 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 PDE1AP54750 535 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 MTMR2Q13614 643 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 B4GALNT3Q6L9W6 998 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 PROCA1Q8NCQ7 364 aaPredicted RBP24.68■■□□□ 1.54
VTI1B-205ENST00000555543 SLC44A5Q8NCS7 719 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 STRBPQ96SI9 672 aaKnown RBP24.68■■□□□ 1.54
VTI1B-205ENST00000555543 ARHGAP39Q9C0H5 1083 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 SLC45A1Q9Y2W3 748 aa24.68■■□□□ 1.54
VTI1B-205ENST00000555543 M0R2C6 588 aa24.67■■□□□ 1.54
VTI1B-205ENST00000555543 ZFYP08048 801 aaPredicted RBP24.67■■□□□ 1.54
VTI1B-205ENST00000555543 CERKLQ49MI3 558 aaPredicted RBP24.67■■□□□ 1.54
VTI1B-205ENST00000555543 SH3D19Q5HYK7 790 aa24.67■■□□□ 1.54
VTI1B-205ENST00000555543 DYNLL2Q96FJ2 89 aa24.67■■□□□ 1.54
VTI1B-205ENST00000555543 FSD1Q9BTV5 496 aa24.67■■□□□ 1.54
VTI1B-205ENST00000555543 EFCC1Q9HA90 598 aa24.67■■□□□ 1.54
VTI1B-205ENST00000555543 LACTBP83111 547 aaPredicted RBP24.66■■□□□ 1.54
VTI1B-205ENST00000555543 USP17L12C9JPN9 530 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 USP17L21D6R901 530 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 BCRP11274 1271 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 CTGFP29279 349 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 BACE1P56817 501 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 ABCB5Q2M3G0 1257 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 C12orf60Q5U649 245 aa24.65■■□□□ 1.54
VTI1B-205ENST00000555543 SEC62Q99442 399 aaKnown RBP24.65■■□□□ 1.54
VTI1B-205ENST00000555543 GPAA1O43292 621 aa24.64■■□□□ 1.54
VTI1B-205ENST00000555543 ECM2O94769 699 aaPredicted RBP24.64■■□□□ 1.54
VTI1B-205ENST00000555543 GUCY1A2P33402 732 aa24.64■■□□□ 1.54
VTI1B-205ENST00000555543 PTPN22Q9Y2R2 807 aa24.64■■□□□ 1.54
VTI1B-205ENST00000555543 CENPFP49454 3210 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 GSG1L2A8MUP6 293 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 NUCB1Q02818 461 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 RAB3GAP1Q15042 981 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 CTR9Q6PD62 1173 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 CHD1LQ86WJ1 897 aa24.63■■□□□ 1.53
VTI1B-205ENST00000555543 EPB41L4AQ9HCS5 686 aaPredicted RBP24.63■■□□□ 1.53
VTI1B-205ENST00000555543 USP17L10C9JJH3 530 aa24.62■■□□□ 1.53
VTI1B-205ENST00000555543 ZMYM1Q5SVZ6 1142 aa24.62■■□□□ 1.53
VTI1B-205ENST00000555543 DDRGK1Q96HY6 314 aa24.62■■□□□ 1.53
VTI1B-205ENST00000555543 SEPT2Q15019 361 aa24.61■■□□□ 1.53
VTI1B-205ENST00000555543 LRRFIP1Q32MZ4 808 aaKnown RBP24.61■■□□□ 1.53
VTI1B-205ENST00000555543 ACER1Q8TDN7 264 aa24.61■■□□□ 1.53
VTI1B-205ENST00000555543 SMCR8Q8TEV9 937 aaPredicted RBP24.61■■□□□ 1.53
VTI1B-205ENST00000555543 EMILIN3Q9NT22 766 aa24.61■■□□□ 1.53
VTI1B-205ENST00000555543 SWAP70Q9UH65 585 aa24.61■■□□□ 1.53
VTI1B-205ENST00000555543 MYH8P13535 1937 aa24.61■■□□□ 1.53
VTI1B-205ENST00000555543 C19orf81C9J6K1 198 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 KIF22Q14807 665 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 ZYXQ15942 572 aaKnown RBP24.6■■□□□ 1.53
VTI1B-205ENST00000555543 C16orf86Q6ZW13 317 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 TRIM47Q96LD4 638 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 ASCC2Q9H1I8 757 aaPredicted RBP24.6■■□□□ 1.53
VTI1B-205ENST00000555543 CABP5Q9NP86 173 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 TMOD4Q9NZQ9 345 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 ARPP21Q9UBL0 812 aaPredicted RBP24.6■■□□□ 1.53
VTI1B-205ENST00000555543 PNMA3Q9UL41 463 aa24.6■■□□□ 1.53
VTI1B-205ENST00000555543 MPHOSPH10O00566 681 aaKnown RBP24.59■■□□□ 1.53
VTI1B-205ENST00000555543 PSMC4P43686 418 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 CDK8P49336 464 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 GIMAP6Q6P9H5 292 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 AMOTL1Q8IY63 956 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 EVI5LQ96CN4 794 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 FEZ1Q99689 392 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 PTCH2Q9Y6C5 1203 aa24.59■■□□□ 1.53
VTI1B-205ENST00000555543 AKR1B1P15121 316 aa24.58■■□□□ 1.53
VTI1B-205ENST00000555543 SOX10P56693 466 aa24.58■■□□□ 1.53
VTI1B-205ENST00000555543 PABPC4Q13310 644 aaKnown RBP eCLIP24.58■■□□□ 1.53
VTI1B-205ENST00000555543 ARHGEF6Q15052 776 aa24.58■■□□□ 1.53
VTI1B-205ENST00000555543 PLEKHM2Q8IWE5 1019 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms