RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NOP2P46087 812 aaKnown RBP14.02□□□□□ -0.16
SHMT2-207ENST00000553837 SLC39A14Q15043 492 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 PTPAQ15257 358 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 SYNE3Q6ZMZ3 975 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 BARGINQ6ZT62 677 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 NBPF11Q86T75 865 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 CNPY4Q8N129 248 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 SDR42E1Q8WUS8 393 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 SMARCE1Q969G3 411 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 MAP3K14Q99558 947 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 NCAPGQ9BPX3 1015 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 LRP2BPQ9P2M1 347 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 A0A1B0GUL6 1792 aa14.02□□□□□ -0.16
SHMT2-207ENST00000553837 CASZ1Q86V15 1759 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 ZNF804BA4D1E1 1349 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 PFKFB1P16118 471 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 IARSP41252 1262 aaKnown RBP14.02□□□□□ -0.17
SHMT2-207ENST00000553837 TDO2P48775 406 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 GTF2A1P52655 376 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-207ENST00000553837 MFSD6Q6ZSS7 791 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 AOPEPQ8N6M6 819 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 ZNF384Q8TF68 577 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 STAG1Q8WVM7 1258 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 SDF4Q9BRK5 362 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 SLC12A7Q9Y666 1083 aa14.02□□□□□ -0.17
SHMT2-207ENST00000553837 CDKL5O76039 1030 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 ZNF202O95125 648 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 CYP7A1P22680 504 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 ST5P78524 1137 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 DPCR1Q3MIW9 517 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 CMTR1Q8N1G2 835 aaKnown RBP14.01□□□□□ -0.17
SHMT2-207ENST00000553837 GOLGA5Q8TBA6 731 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 SLC26A6Q9BXS9 759 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 KIAA1468Q9P260 1216 aa14.01□□□□□ -0.17
SHMT2-207ENST00000553837 MYO1CO00159 1063 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 MYCNP04198 464 aaPredicted RBP14□□□□□ -0.17
SHMT2-207ENST00000553837 CMA1P23946 247 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 OAS2P29728 719 aaKnown RBP14□□□□□ -0.17
SHMT2-207ENST00000553837 SMC1AQ14683 1233 aaKnown RBP14□□□□□ -0.17
SHMT2-207ENST00000553837 SHC4Q6S5L8 630 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 BICDL1Q6ZP65 573 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 GNL3Q9BVP2 549 aaKnown RBP eCLIP14□□□□□ -0.175e-8■■■□□ 18.8
SHMT2-207ENST00000553837 PSD3Q9NYI0 1048 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 ABCF2Q9UG63 623 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 DNAI1Q9UI46 699 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 KCNG1Q9UIX4 513 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 BIN1O00499 593 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 TADA3O75528 432 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 KLRK1P26718 216 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 CASQ1P31415 396 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 FAM98CQ17RN3 349 aaKnown RBP14□□□□□ -0.17
SHMT2-207ENST00000553837 ARMCX5Q6P1M9 558 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 CEP120Q8N960 986 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 CELF1Q92879 486 aaKnown RBP14□□□□□ -0.17
SHMT2-207ENST00000553837 CLIC6Q96NY7 704 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 KRT23Q9C075 422 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 TOMM22Q9NS69 142 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 CACNA1SQ13698 1873 aa14□□□□□ -0.17
SHMT2-207ENST00000553837 FMNL1O95466 1100 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 GNAT2P19087 354 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 PPARAQ07869 468 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 SF3B3Q15393 1217 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 ICE2Q659A1 982 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 TBC1D9BQ66K14 1250 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 TMC6Q7Z403 805 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 EXOC4Q96A65 974 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 RIOK1Q9BRS2 568 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CNNM2Q9H8M5 875 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 MINPP1Q9UNW1 487 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 NID2Q14112 1375 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CYP2D7A0A087X1C5 515 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 TBC1D8O95759 1140 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 IFNAR1P17181 557 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 DYNLL1P63167 89 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 SSRP1Q08945 709 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CPLX2Q6PUV4 134 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CLEC4GQ6UXB4 293 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 ANKRD18AQ8IVF6 992 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 HOMEZQ8IX15 550 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 C10orf67Q8IYJ2 551 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CCDC82Q8N4S0 544 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 GPR161Q8N6U8 529 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 SMARCC1Q92922 1105 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 CDC5LQ99459 802 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 BPIFA3Q9BQP9 254 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 NACAP1Q9BZK3 213 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 ZCCHC17Q9NP64 241 aaKnown RBP13.99□□□□□ -0.17
SHMT2-207ENST00000553837 KCNJ14Q9UNX9 436 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 HPSEQ9Y251 543 aa13.99□□□□□ -0.17
SHMT2-207ENST00000553837 STK36Q9NRP7 1315 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 MINDY4BA8MYZ0 360 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 URI1O94763 535 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 SEC31AO94979 1220 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 SMC2O95347 1197 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 HSPA1LP34931 641 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 EVX2Q03828 476 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 ZRSR1Q15695 479 aaKnown RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 CC2D1AQ6P1N0 951 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-207ENST00000553837 GOLGA6L1Q8N7Z2 621 aa13.98□□□□□ -0.17
SHMT2-207ENST00000553837 SHISA4Q96DD7 197 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms