RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 HOXA7P31268 230 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-209ENST00000553308 CACNB2Q08289 660 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-209ENST00000553308 CCL14Q16627 93 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 POTEEQ6S8J3 1075 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 MAPKAPK5Q8IW41 473 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 GPRC5AQ8NFJ5 357 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 PORCNQ9H237 461 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 MTMR10Q9NXD2 777 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 AATFQ9NY61 560 aaKnown RBP eCLIP11.19□□□□□ -0.62
SYNE2-209ENST00000553308 LRP2BPQ9P2M1 347 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 RBPJLQ9UBG7 517 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 STXBP5LQ9Y2K9 1186 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 FRMPD3Q5JV73 1810 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 FOCADQ5VW36 1801 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 LAMA3Q16787 3333 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 GNAI3P08754 354 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 CT47B1P0C2W7 299 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-209ENST00000553308 MAPK4P31152 587 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 ERVK-9P63128 1117 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 ERVK-24P63145 666 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 PDE3AQ14432 1141 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 LRRC26Q2I0M4 334 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 Q3C1V9 767 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 NAA16Q6N069 864 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-209ENST00000553308 GPR142Q7Z601 462 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 ADGRA1Q86SQ6 560 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 CRACR2BQ8N4Y2 399 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-209ENST00000553308 TGFBRAP1Q8WUH2 860 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 USP6NLQ92738 828 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 NOL10Q9BSC4 688 aaKnown RBP11.18□□□□□ -0.62
SYNE2-209ENST00000553308 PAGR1Q9BTK6 254 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 DHX36Q9H2U1 1008 aaKnown RBP11.18□□□□□ -0.62
SYNE2-209ENST00000553308 SNRKQ9NRH2 765 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 ZBTB21Q9ULJ3 1066 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 COL6A3P12111 3177 aa11.18□□□□□ -0.62
SYNE2-209ENST00000553308 PNMA6EA0A0J9YXQ4 647 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 C19orf81C9J6K1 198 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 USP17L10C9JJH3 530 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 UQCRFS1P1P0C7P4 283 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 MDM2Q00987 491 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-209ENST00000553308 MORN1Q5T089 497 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 LHX8Q68G74 356 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
SYNE2-209ENST00000553308 APBA2Q99767 749 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 SAP30BPQ9UHR5 308 aaKnown RBP11.17□□□□□ -0.62
SYNE2-209ENST00000553308 PALD1Q9ULE6 856 aa11.17□□□□□ -0.62
SYNE2-209ENST00000553308 MYO5AQ9Y4I1 1855 aaKnown RBP11.17□□□□□ -0.62
SYNE2-209ENST00000553308 BAG3O95817 575 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 PLCG2P16885 1265 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 RGS2P41220 211 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 RARSP54136 660 aaKnown RBP11.16□□□□□ -0.62
SYNE2-209ENST00000553308 PLEKHH3Q7Z736 793 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 CCAR1Q8IX12 1150 aaKnown RBP11.16□□□□□ -0.62
SYNE2-209ENST00000553308 TRMT44Q8IYL2 757 aaKnown RBP11.16□□□□□ -0.62
SYNE2-209ENST00000553308 TRIM34Q9BYJ4 488 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 EMILIN3Q9NT22 766 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 TNNQ9UQP3 1299 aa11.16□□□□□ -0.62
SYNE2-209ENST00000553308 CNMDO75829 334 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 CYP2E1P05181 493 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-209ENST00000553308 PPP4CP60510 307 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 G3BP1Q13283 466 aaKnown RBP eCLIP11.15□□□□□ -0.62
SYNE2-209ENST00000553308 ZYXQ15942 572 aaKnown RBP11.15□□□□□ -0.62
SYNE2-209ENST00000553308 TTC39AQ5SRH9 613 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 FOXP4Q8IVH2 680 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-209ENST00000553308 GTF3C2Q8WUA4 911 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-209ENST00000553308 ARHGAP45Q92619 1136 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 DBNDD2Q9BQY9 259 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 FLRT1Q9NZU1 646 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 NDUFB9Q9Y6M9 179 aa11.15□□□□□ -0.62
SYNE2-209ENST00000553308 GH2P01242 217 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 GNAI2P04899 355 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 TRIM27P14373 513 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 DYNLL1P63167 89 aaKnown RBP11.14□□□□□ -0.63
SYNE2-209ENST00000553308 MAP2K5Q13163 448 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 TNNI3KQ59H18 835 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L2Q6R6M4 530 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 GUCD1Q96NT3 240 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 CWC22Q9HCG8 908 aaKnown RBP11.14□□□□□ -0.63
SYNE2-209ENST00000553308 PIH1D3Q9NQM4 214 aaKnown RBP11.14□□□□□ -0.63
SYNE2-209ENST00000553308 GINM1Q9NU53 330 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 FPGT-TNNI3KV9GXZ4 949 aa11.14□□□□□ -0.63
SYNE2-209ENST00000553308 HLA-DOAP06340 250 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 ZAP70P43403 619 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 WDR78Q5VTH9 848 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 EDC3Q96F86 508 aaKnown RBP11.13□□□□□ -0.63
SYNE2-209ENST00000553308 C12orf42Q96LP6 360 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 FAM161BQ96MY7 647 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 FEZ1Q99689 392 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 COL25A1Q9BXS0 654 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-209ENST00000553308 SENP6Q9GZR1 1112 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-209ENST00000553308 RABGAP1Q9Y3P9 1069 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 MYH1P12882 1939 aa11.13□□□□□ -0.63
SYNE2-209ENST00000553308 LTBP2Q14767 1821 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L15C9J2P7 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L13C9JLJ4 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L11C9JVI0 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L18D6R9N7 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L22D6RA61 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L17D6RBQ6 530 aa11.12□□□□□ -0.63
SYNE2-209ENST00000553308 USP17L19D6RCP7 530 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms