RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NDUFB9Q9Y6M9 179 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.05■□□□□ 0.16
VPS29-211ENST00000553128 PTPRCP08575 1304 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 PDS5AQ29RF7 1337 aaKnown RBP16.04■□□□□ 0.16
VPS29-211ENST00000553128 SIPA1L1O43166 1804 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 LTBP2Q14767 1821 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 IL15P40933 162 aaPredicted RBP16.04■□□□□ 0.16
VPS29-211ENST00000553128 RTP1P59025 263 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 PLEKHH3Q7Z736 793 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 APBA2Q99767 749 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 DNAJC18Q9H819 358 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 AS3MTQ9HBK9 375 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 MRS2Q9HD23 443 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 FBXO3Q9UK99 471 aa16.04■□□□□ 0.16
VPS29-211ENST00000553128 SPTY2D1Q68D10 685 aaPredicted RBP16.03■□□□□ 0.16
VPS29-211ENST00000553128 SSH1Q8WYL5 1049 aa16.03■□□□□ 0.16
VPS29-211ENST00000553128 NSUN4Q96CB9 384 aaKnown RBP16.03■□□□□ 0.16
VPS29-211ENST00000553128 TMOD4Q9NZQ9 345 aa16.03■□□□□ 0.16
VPS29-211ENST00000553128 RAPGEFL1Q9UHV5 662 aa16.03■□□□□ 0.16
VPS29-211ENST00000553128 TTC28Q96AY4 2481 aa16.03■□□□□ 0.16
VPS29-211ENST00000553128 CNMDO75829 334 aa16.02■□□□□ 0.16
VPS29-211ENST00000553128 GDF11O95390 407 aa16.02■□□□□ 0.16
VPS29-211ENST00000553128 TRPV1Q8NER1 839 aa16.02■□□□□ 0.16
VPS29-211ENST00000553128 SH3RF3Q8TEJ3 882 aaPredicted RBP16.02■□□□□ 0.16
VPS29-211ENST00000553128 XAGE2Q96GT9 111 aa16.02■□□□□ 0.16
VPS29-211ENST00000553128 DDX20Q9UHI6 824 aaKnown RBP16.02■□□□□ 0.16
VPS29-211ENST00000553128 HERC5Q9UII4 1024 aaKnown RBP16.02■□□□□ 0.16
VPS29-211ENST00000553128 ATP11BQ9Y2G3 1177 aa16.02■□□□□ 0.16
VPS29-211ENST00000553128 MAP2K5Q13163 448 aa16.01■□□□□ 0.15
VPS29-211ENST00000553128 CCAR1Q8IX12 1150 aaKnown RBP16.01■□□□□ 0.15
VPS29-211ENST00000553128 TEX11Q8IYF3 940 aa16.01■□□□□ 0.15
VPS29-211ENST00000553128 EDC3Q96F86 508 aaKnown RBP16.01■□□□□ 0.15
VPS29-211ENST00000553128 EMILIN3Q9NT22 766 aa16.01■□□□□ 0.15
VPS29-211ENST00000553128 HMG20BQ9P0W2 317 aa16.01■□□□□ 0.15
VPS29-211ENST00000553128 A0A1B0GUL7 405 aa16■□□□□ 0.15
VPS29-211ENST00000553128 USP17L10C9JJH3 530 aa16■□□□□ 0.15
VPS29-211ENST00000553128 COL9A1P20849 921 aa16■□□□□ 0.15
VPS29-211ENST00000553128 GJC2Q5T442 439 aaPredicted RBP16■□□□□ 0.15
VPS29-211ENST00000553128 USP38Q8NB14 1042 aa16■□□□□ 0.15
VPS29-211ENST00000553128 LPAR1Q92633 364 aa16■□□□□ 0.15
VPS29-211ENST00000553128 BADQ92934 168 aa16■□□□□ 0.15
VPS29-211ENST00000553128 PRKAG2Q9UGJ0 569 aa16■□□□□ 0.15
VPS29-211ENST00000553128 C19orf81C9J6K1 198 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 DNM1LO00429 736 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 ASNSP08243 561 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 UBTFL1P0CB47 393 aaPredicted RBP15.99■□□□□ 0.15
VPS29-211ENST00000553128 FOSL2P15408 326 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 CNGA1P29973 690 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 CYP2C19P33261 490 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 TFCP2Q12800 502 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 SH3RF1Q7Z6J0 888 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 NPLOC4Q8TAT6 608 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 COPRSQ9NQ92 184 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 PRDM5Q9NQX1 630 aaPredicted RBP15.99■□□□□ 0.15
VPS29-211ENST00000553128 PI4KBQ9UBF8 816 aa15.99■□□□□ 0.15
VPS29-211ENST00000553128 MFSD14CQ5VZR4 134 aa15.98■□□□□ 0.15
VPS29-211ENST00000553128 ANO1Q5XXA6 986 aa15.98■□□□□ 0.15
VPS29-211ENST00000553128 CWC22Q9HCG8 908 aaKnown RBP15.98■□□□□ 0.15
VPS29-211ENST00000553128 RAI14Q9P0K7 980 aa15.98■□□□□ 0.15
VPS29-211ENST00000553128 ZBTB21Q9ULJ3 1066 aa15.98■□□□□ 0.15
VPS29-211ENST00000553128 ZNF521Q96K83 1311 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 TRIM43BA6NCK2 446 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 MAP4K4O95819 1239 aaPredicted RBP15.97■□□□□ 0.15
VPS29-211ENST00000553128 IGHA2P01877 340 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 LDHCP07864 332 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 PTPREP23469 700 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 GSTO1P78417 241 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 SMAD3P84022 425 aaKnown RBP15.97■□□□□ 0.15
VPS29-211ENST00000553128 ZYXQ15942 572 aaKnown RBP15.97■□□□□ 0.15
VPS29-211ENST00000553128 TRIM60Q495X7 471 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 WDR78Q5VTH9 848 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 SLC39A5Q6ZMH5 540 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 METTL16Q86W50 562 aaKnown RBP15.97■□□□□ 0.15
VPS29-211ENST00000553128 MAPKAPK5Q8IW41 473 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 SPATA5Q8NB90 893 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 TRIM43Q96BQ3 446 aaPredicted RBP15.97■□□□□ 0.15
VPS29-211ENST00000553128 PDLIM7Q9NR12 457 aa15.97■□□□□ 0.15
VPS29-211ENST00000553128 RLFQ13129 1914 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 CYBAP13498 195 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 ITGB8P26012 769 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 ATP2B2Q01814 1243 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 MVPQ14764 893 aaKnown RBP15.96■□□□□ 0.15
VPS29-211ENST00000553128 GTF3C2Q8WUA4 911 aaPredicted RBP15.96■□□□□ 0.15
VPS29-211ENST00000553128 TGFBRAP1Q8WUH2 860 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 SYMPKQ92797 1274 aaKnown RBP15.96■□□□□ 0.15
VPS29-211ENST00000553128 NEUROD6Q96NK8 337 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 AATFQ9NY61 560 aaKnown RBP eCLIP15.96■□□□□ 0.15
VPS29-211ENST00000553128 BTBD7Q9P203 1132 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 PALD1Q9ULE6 856 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 RABGAP1Q9Y3P9 1069 aa15.96■□□□□ 0.15
VPS29-211ENST00000553128 FLT1P17948 1338 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 SLC15A5A6NIM6 579 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 HOXC6P09630 235 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 MCAMP43121 646 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 EPHB4P54760 987 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 GRB14Q14449 540 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 USP17L2Q6R6M4 530 aa15.95■□□□□ 0.14
VPS29-211ENST00000553128 ADGRA1Q86SQ6 560 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms