RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 UBE4AQ14139 1066 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 SLC39A14Q15043 492 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 NOSTRINQ8IVI9 506 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 ENGASEQ8NFI3 743 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 CNNM2Q9H8M5 875 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 QTRT2Q9H974 415 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 DCP1AQ9NPI6 582 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 FANCLQ9NW38 375 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 NARFQ9UHQ1 456 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 JCADQ9P266 1359 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 ARFGEF2Q9Y6D5 1785 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TMEM232C9JQI7 657 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 RIOK3O14730 519 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TSPY3P0CV98 308 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TSPY8P0CW00 308 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 PLCD1P51178 756 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 IQCB1Q15051 598 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 AXDND1Q5T1B0 1012 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 CCAR2Q8N163 923 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 JMYQ8N9B5 988 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 NSUN4Q96CB9 384 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 CSRNP2Q9H175 543 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 AFF2P51816 1311 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF500O60304 480 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 SERPINB2P05120 415 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TOB1P50616 345 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 PDE4BQ07343 736 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 TRMT1LQ7Z2T5 733 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 BRAPQ7Z569 592 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 FOXP4Q8IVH2 680 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 ZSCAN29Q8IWY8 852 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 DHX40Q8IX18 779 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 NAT10Q9H0A0 1025 aaKnown RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 KAT14Q9H8E8 782 aa6.42□□□□□ -1.38
LIMA1-215ENST00000552823 PPP1R1BQ9UD71 204 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-215ENST00000552823 FRMPD2Q68DX3 1309 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 SALL1Q9NSC2 1324 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 PP2D1A8MPX8 630 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 UBASH3AP57075 661 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 GPSM2P81274 684 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 MFSD14BQ5SR56 506 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 USP17L2Q6R6M4 530 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 TEX11Q8IYF3 940 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 SRBD1Q8N5C6 995 aaKnown RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 KRI1Q8N9T8 703 aaKnown RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 RIOK1Q9BRS2 568 aaKnown RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 GPCPD1Q9NPB8 672 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 TRIM75PA6NK02 468 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 FMNL1O95466 1100 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 LRRC47Q8N1G4 583 aaKnown RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 TDRD7Q8NHU6 1098 aaKnown RBP6.41□□□□□ -1.38
LIMA1-215ENST00000552823 KIAA1524Q8TCG1 905 aa6.41□□□□□ -1.38
LIMA1-215ENST00000552823 CCDC196A0A1B0GTZ2 297 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 CTAGE5O15320 804 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 DEXIO95424 95 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 YEATS4O95619 227 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 MMP1P03956 469 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 IFNAR1P17181 557 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 XBP1P17861 261 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 GNAT2P19087 354 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 CMA1P23946 247 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 BTDP43251 543 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 SNAP25P60880 206 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 TPM4P67936 248 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 FANCCQ00597 558 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 JAKMIP3Q5VZ66 844 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 NYXQ9GZU5 481 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 ZSWIM4Q9H7M6 989 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 DBNDD1Q9H9R9 158 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 KCNQ5Q9NR82 932 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 SAMSN1Q9NSI8 373 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 POLR3EQ9NVU0 708 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 PCDHAC2Q9Y5I4 1007 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 MYO5AQ9Y4I1 1855 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 ADKP55263 362 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 CBX1P83916 185 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 PTGDRQ13258 359 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 SF3B3Q15393 1217 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 INF2Q27J81 1249 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 HS1BP3Q53T59 392 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 PRR5LQ6MZQ0 368 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 METTL16Q86W50 562 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 STAG1Q8WVM7 1258 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 GJA10Q969M2 543 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 SHISA4Q96DD7 197 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 ZFP91Q96JP5 570 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 GJD4Q96KN9 370 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 POLD4Q9HCU8 107 aa6.4□□□□□ -1.38
LIMA1-215ENST00000552823 THRAP3Q9Y2W1 955 aaKnown RBP6.4□□□□□ -1.38
LIMA1-215ENST00000552823 RFX7Q2KHR2 1363 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 MARCH6O60337 910 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 SSBP05455 408 aaKnown RBP eCLIP6.4□□□□□ -1.39
LIMA1-215ENST00000552823 TAL1P17542 331 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-215ENST00000552823 KRT2P35908 639 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 CCT6AP40227 531 aaKnown RBP6.4□□□□□ -1.39
LIMA1-215ENST00000552823 LIFRP42702 1097 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 CLEC4GQ6UXB4 293 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 FBXO33Q7Z6M2 555 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 KIAA0825Q8IV33 1275 aa6.4□□□□□ -1.39
LIMA1-215ENST00000552823 AMOTL1Q8IY63 956 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms