RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	CALR3	Q96L12	384 aa	Known RBP	4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	KCNK12	Q9HB15	430 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	LATS2	Q9NRM7	1088 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	SMG5	Q9UPR3	1016 aa	Known RBP	4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	ABCA6	Q8N139	1617 aa		4.03	□□□□□ -1.77
PTCH1-223	ENST00000551623	RNF17	Q9BXT8	1623 aa	Known RBP	4.03	□□□□□ -1.77
PTCH1-223	ENST00000551623	SYNM	O15061	1565 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	ETV2	O00321	342 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	PHACTR2	O75167	634 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	PDGFA	P04085	211 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	FLII	Q13045	1269 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	PROSER2	Q86WR7	435 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	FANCD2OS	Q96PS1	177 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	EPB41L4B	Q9H329	900 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	ATXN3L	Q9H3M9	355 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	ZCCHC4	Q9H5U6	513 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	A2ML1	A8K2U0	1454 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	DEPDC5	O75140	1603 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	ZMYM3	Q14202	1370 aa		4.02	□□□□□ -1.77
PTCH1-223	ENST00000551623	CDK12	Q9NYV4	1490 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	PLEKHD1	A6NEE1	506 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	PSPN	O60542	156 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	SPACA3	Q8IXA5	215 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	TOP6BL	Q8N6T0	577 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	DDX54	Q8TDD1	881 aa	Known RBP	4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	SNX29	Q8TEQ0	813 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	HEXIM2	Q96MH2	286 aa	Known RBP	4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	IRF2BPL	Q9H1B7	796 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	TMPRSS5	Q9H3S3	457 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	C19orf73	Q9NVV2	129 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	FAM135B	Q49AJ0	1406 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	PLXNC1	O60486	1568 aa		4.01	□□□□□ -1.77
PTCH1-223	ENST00000551623	LRRC7	Q96NW7	1537 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	FAM135A	Q9P2D6	1515 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	DNMT1	P26358	1616 aa	Known RBP	4	□□□□□ -1.77
PTCH1-223	ENST00000551623	TNFRSF21	O75509	655 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	B3GALT4	O96024	378 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	BMP7	P18075	431 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	LIG1	P18858	919 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	GDNF	P39905	211 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	GRIA4	P48058	902 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	ID3	Q02535	119 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	NFIX	Q14938	502 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	SPRED3	Q2MJR0	410 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	CDCA8	Q53HL2	280 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	EFCAB2	Q5VUJ9	269 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	DISC1	Q9NRI5	854 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	FOXD3	Q9UJU5	478 aa	Predicted RBP	4	□□□□□ -1.77
PTCH1-223	ENST00000551623	PCOLCE2	Q9UKZ9	415 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	AMOTL2	Q9Y2J4	779 aa		4	□□□□□ -1.77
PTCH1-223	ENST00000551623	POLR1A	O95602	1720 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	MZF1	P28698	734 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	NFKB2	Q00653	900 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	TTLL4	Q14679	1199 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	CFAP70	Q5T0N1	1121 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	PRRT2	Q7Z6L0	340 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	CCNJL	Q8IV13	435 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	KCNN1	Q92952	543 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	WDR89	Q96FK6	387 aa	Predicted RBP	3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	BORCS6	Q96GS4	357 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	SLC26A8	Q96RN1	970 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	CARS2	Q9HA77	564 aa	Known RBP	3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	GTF2IRD1	Q9UHL9	959 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	ZMIZ1	Q9ULJ6	1067 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	ABCC1	P33527	1531 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	KIDINS220	Q9ULH0	1771 aa		3.99	□□□□□ -1.77
PTCH1-223	ENST00000551623	IGF2BP3	O00425	579 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	RNGTT	O60942	597 aa	Known RBP	3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	SLFN14	P0C7P3	912 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	HCLS1	P14317	486 aa	Predicted RBP	3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	CLCN7	P51798	805 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	KRTAP1-1	Q07627	177 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	AP3B2	Q13367	1082 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	NKPD1	Q17RQ9	610 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	SKOR2	Q2VWA4	1001 aa	Predicted RBP	3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	FAM214B	Q7L5A3	538 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	AFAP1	Q8N556	730 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	STK32A	Q8WU08	396 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	KCNC2	Q96PR1	638 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	CDK13	Q14004	1512 aa	Known RBP	3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	MYO5C	Q9NQX4	1742 aa		3.98	□□□□□ -1.77
PTCH1-223	ENST00000551623	CNTNAP4	Q9C0A0	1308 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	KDM5D	Q9BY66	1539 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	ARID3C	A6NKF2	412 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	SRF	P11831	508 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	ELOA	Q14241	798 aa	Known RBP	3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	NOM1	Q5C9Z4	860 aa	Known RBP	3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	CXorf38	Q8TB03	319 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	TCF12	Q99081	682 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	LIN7B	Q9HAP6	207 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	RTEL1	Q9NZ71	1219 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	PCDHGC5	Q9Y5F6	944 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	NLRP1	Q9C000	1473 aa		3.97	□□□□□ -1.77
PTCH1-223	ENST00000551623	NPHP4	O75161	1426 aa	Predicted RBP	3.96	□□□□□ -1.77
PTCH1-223	ENST00000551623	SETD1A	O15047	1707 aa	Known RBP	3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	ADAMTS20	P59510	1910 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZNF862	O60290	1169 aa		3.96	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms