RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SLAIN2Q9P270 581 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 AMOTL2Q9Y2J4 779 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 GTF3C3Q9Y5Q9 886 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 PREX2Q70Z35 1606 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 DHX29Q7Z478 1369 aaKnown RBP5.76□□□□□ -1.49
LIMA1-206ENST00000550611 XIRP1Q702N8 1843 aaKnown RBP5.76□□□□□ -1.49
LIMA1-206ENST00000550611 PLXNC1O60486 1568 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 ZNF644Q9H582 1327 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-206ENST00000550611 RGS12O14924 1447 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 RNF17Q9BXT8 1623 aaKnown RBP5.75□□□□□ -1.49
LIMA1-206ENST00000550611 POLR1AO95602 1720 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-206ENST00000550611 KCNMB1Q16558 191 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 MLANAQ16655 118 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 ALKBH2Q6NS38 261 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 TTLL10Q6ZVT0 673 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 WDR18Q9BV38 432 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 LGR6Q9HBX8 967 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 CRIM1Q9NZV1 1036 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 PPP1R9AQ9ULJ8 1098 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 U3KQE9 123 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 TNRQ92752 1358 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 PLEKHH2Q8IVE3 1493 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 MBD5Q9P267 1494 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 ITSN2Q9NZM3 1697 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 ROBO1Q9Y6N7 1651 aa5.75□□□□□ -1.49
LIMA1-206ENST00000550611 RTEL1-TNFRSF6BF6WH68 1400 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 SYCP2Q9BX26 1530 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 LRRIQ1Q96JM4 1722 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 ECEL1O95672 775 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 B3GALT4O96024 378 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 ZSCAN22P10073 491 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-206ENST00000550611 USP5P45974 858 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 OXCT1P55809 520 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 RBM6P78332 1123 aaKnown RBP5.74□□□□□ -1.49
LIMA1-206ENST00000550611 CDK5R2Q13319 367 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 DEFB132Q7Z7B7 95 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 FOXD3Q9UJU5 478 aaPredicted RBP5.74□□□□□ -1.49
LIMA1-206ENST00000550611 POLIQ9UNA4 740 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 TMEM94Q12767 1356 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 MED14O60244 1454 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 ATP7AQ04656 1500 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 MIA2Q96PC5 1412 aa5.74□□□□□ -1.49
LIMA1-206ENST00000550611 FYCO1Q9BQS8 1478 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 CCNB3Q8WWL7 1395 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 CEACAM5P06731 702 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 ATP2B4P23634 1241 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 C8orf37Q96NL8 207 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 TCF12Q99081 682 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 TNKS2Q9H2K2 1166 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 PLAGL2Q9UPG8 496 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 SNX11Q9Y5W9 270 aa5.73□□□□□ -1.49
LIMA1-206ENST00000550611 INO80Q9ULG1 1556 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-206ENST00000550611 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-206ENST00000550611 KIF3BO15066 747 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 MPSTP25325 297 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 GRIA4P48058 902 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 SPRED3Q2MJR0 410 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 TXNDC2Q86VQ3 553 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 AMIGO3Q86WK7 504 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 ATXN3LQ9H3M9 355 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 ZFYVE28Q9HCC9 887 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 LMCD1Q9NZU5 365 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 CEP350Q5VT06 3117 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 SPATA31A6Q5VVP1 1343 aa5.72□□□□□ -1.49
LIMA1-206ENST00000550611 PZPP20742 1482 aa5.71□□□□□ -1.49
LIMA1-206ENST00000550611 PHLPP1O60346 1717 aa5.71□□□□□ -1.49
LIMA1-206ENST00000550611 CDC42BPAQ5VT25 1732 aa5.71□□□□□ -1.49
LIMA1-206ENST00000550611 TMPRSS2O15393 492 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 BUD31P41223 144 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-206ENST00000550611 AP3B2Q13367 1082 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 PDE3AQ14432 1141 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 LIN37Q96GY3 246 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-206ENST00000550611 SLC26A8Q96RN1 970 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 PIDD1Q9HB75 910 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 CTNND2Q9UQB3 1225 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 IQGAP1P46940 1657 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 WASHC2CQ9Y4E1 1318 aa5.71□□□□□ -1.5
LIMA1-206ENST00000550611 CDK12Q9NYV4 1490 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-206ENST00000550611 A0A1W2PP55 124 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 NPR3P17342 541 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 ARHGAP27Q6ZUM4 889 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 SYDE1Q6ZW31 735 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-206ENST00000550611 SMYD4Q8IYR2 804 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-206ENST00000550611 DUSP23Q9BVJ7 150 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 LIN7BQ9HAP6 207 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 NLRP1Q9C000 1473 aa5.7□□□□□ -1.5
LIMA1-206ENST00000550611 FAM135AQ9P2D6 1515 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 MTUS2Q5JR59 1369 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 UGGT1Q9NYU2 1555 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 CEP162Q5TB80 1403 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 LEFTY1O75610 366 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 KRT1P04264 644 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 SLFN14P0C7P3 912 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 KCNA6P17658 529 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 AFMP43652 599 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 GALNT12Q8IXK2 581 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 ASB11Q8WXH4 323 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 FANCD2OSQ96PS1 177 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 ZNF576Q9H609 170 aa5.69□□□□□ -1.5
LIMA1-206ENST00000550611 DEPDC5O75140 1603 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms