RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 DNAJC18Q9H819 358 aa13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 CABP5Q9NP86 173 aa13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 ZBTB21Q9ULJ3 1066 aa13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 DOCK2Q92608 1830 aa13.18□□□□□ -0.3
VTI1BP3-201ENST00000550220 GOLIM4O00461 696 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 ADCY3O60266 1144 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 ECM2O94769 699 aaPredicted RBP13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 POLR3DP05423 398 aaPredicted RBP13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 GJB1P08034 283 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 PDE6AP16499 860 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 ATP5JP18859 108 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 USP14P54578 494 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 MTMR2Q13614 643 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 USP17L2Q6R6M4 530 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 RIOK1Q9BRS2 568 aaKnown RBP13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 LRRCC1Q9C099 1032 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 ASCC2Q9H1I8 757 aaPredicted RBP13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 NDUFB9Q9Y6M9 179 aa13.17□□□□□ -0.3
VTI1BP3-201ENST00000550220 GJA8P48165 433 aa13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 CERKLQ49MI3 558 aaPredicted RBP13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 ZSCAN25Q6NSZ9 544 aa13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 DNAJC2Q99543 621 aaKnown RBP13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 RNF208Q9H0X6 261 aa13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 PAG1Q9NWQ8 432 aa13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 MORF4L1Q9UBU8 362 aa13.16□□□□□ -0.3
VTI1BP3-201ENST00000550220 ZNF532Q9HCE3 1301 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 GDF11O95390 407 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 SLC34A2O95436 690 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 MYCP01106 439 aaPredicted RBP13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 GH2P01242 217 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 CCL5P13501 91 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 ABCB5Q2M3G0 1257 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 AMOTL1Q8IY63 956 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 GPRC5AQ8NFJ5 357 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 DDRGK1Q96HY6 314 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 FEZ1Q99689 392 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 HAUS7Q99871 368 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 ATP8A2Q9NTI2 1148 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 MCM9Q9NXL9 1143 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 SWAP70Q9UH65 585 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 GABRQQ9UN88 632 aa13.15□□□□□ -0.3
VTI1BP3-201ENST00000550220 DOCK1Q14185 1865 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 UBE3CQ15386 1083 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 MTFR1Q15390 333 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 CCAR1Q8IX12 1150 aaKnown RBP13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 GPATCH3Q96I76 525 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 C12orf42Q96LP6 360 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 P2RX7Q99572 595 aaKnown RBP13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 BOLA2Q9H3K6 86 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 HTTP42858 3142 aa13.14□□□□□ -0.31
VTI1BP3-201ENST00000550220 TCRBV5S4A2TA0A5A2 114 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L15C9J2P7 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L13C9JLJ4 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L11C9JVI0 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L18D6R9N7 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L22D6RA61 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L17D6RBQ6 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L19D6RCP7 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L20D6RJB6 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 MAPK4P31152 587 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 ADD2P35612 726 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 HERVK_113P62684 666 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 JAG1P78504 1218 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 USP17L24Q0WX57 530 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 RAB3GAP1Q15042 981 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 TRMT44Q8IYL2 757 aaKnown RBP13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 HTATIP2Q9BUP3 242 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 KIAA1683Q9H0B3 1180 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 BCL11AQ9H165 835 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 EMILIN3Q9NT22 766 aa13.13□□□□□ -0.31
VTI1BP3-201ENST00000550220 MAST2Q6P0Q8 1798 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 SGPL1O95470 568 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 INHAP05111 366 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 PLCD1P51178 756 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 CCNA1P78396 465 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 GABPAQ06546 454 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 U2AF1L4Q8WU68 220 aaKnown RBP13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 SOCS4Q8WXH5 440 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 DCTPP1Q9H773 170 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 DCP1AQ9NPI6 582 aaPredicted RBP13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 ECHDC1Q9NTX5 307 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 GJD2Q9UKL4 321 aa13.12□□□□□ -0.31
VTI1BP3-201ENST00000550220 GLRX3O76003 335 aaKnown RBP13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 HMGCRP04035 888 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 XRCC5P13010 732 aaKnown RBP13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 SHMT1P34896 483 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 LRRFIP1Q32MZ4 808 aaKnown RBP13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 C20orf194Q5TEA3 1177 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 LCORLQ8N3X6 602 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 CCDC17Q96LX7 622 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 NUDT12Q9BQG2 462 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 UNC93B1Q9H1C4 597 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 RBPJLQ9UBG7 517 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 RABGAP1Q9Y3P9 1069 aa13.11□□□□□ -0.31
VTI1BP3-201ENST00000550220 MPHOSPH10O00566 681 aaKnown RBP13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 TFRCP02786 760 aaKnown RBP13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 ELNP15502 786 aa13.1□□□□□ -0.31
VTI1BP3-201ENST00000550220 ERVK-9P63128 1117 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms