RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 DNAJC18Q9H819 358 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 CABP5Q9NP86 173 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 SWAP70Q9UH65 585 aa14.21□□□□□ -0.13
HDAC4-216ENST00000544989 SZT2Q5T011 3432 aa14.21□□□□□ -0.14
HDAC4-216ENST00000544989 RNF113AO15541 343 aaKnown RBP14.2□□□□□ -0.14
HDAC4-216ENST00000544989 SLURP2P0DP57 97 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 GNAT2P19087 354 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 PRMT2P55345 433 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 CERKLQ49MI3 558 aaPredicted RBP14.2□□□□□ -0.14
HDAC4-216ENST00000544989 GIMAP6Q6P9H5 292 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 C17orf99Q6UX52 265 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 CD99L2Q8TCZ2 262 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 APPBP2Q92624 585 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 ARMT1Q9H993 441 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 TMOD4Q9NZQ9 345 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 ZBTB21Q9ULJ3 1066 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 HPS5Q9UPZ3 1129 aa14.2□□□□□ -0.14
HDAC4-216ENST00000544989 MYH7P12883 1935 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 USP17L10C9JJH3 530 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 OSBPP22059 807 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 HOXD10P28358 340 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 USP14P54578 494 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 BACE1P56817 501 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 LACTBP83111 547 aaPredicted RBP14.19□□□□□ -0.14
HDAC4-216ENST00000544989 ABCB5Q2M3G0 1257 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 PI4K2BQ8TCG2 481 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 SMCR8Q8TEV9 937 aaPredicted RBP14.19□□□□□ -0.14
HDAC4-216ENST00000544989 SDR42E1Q8WUS8 393 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 STAP2Q9UGK3 403 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 SUPT16HQ9Y5B9 1047 aaKnown RBP14.19□□□□□ -0.14
HDAC4-216ENST00000544989 SLC4A4Q9Y6R1 1079 aa14.19□□□□□ -0.14
HDAC4-216ENST00000544989 ADGRA2Q96PE1 1338 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 SIPA1L1O43166 1804 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 PHIPQ8WWQ0 1821 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 GDF11O95390 407 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 GH2P01242 217 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 GCLCP48506 637 aaPredicted RBP14.18□□□□□ -0.14
HDAC4-216ENST00000544989 PLCD1P51178 756 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 HMGCS2P54868 508 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 SOX10P56693 466 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 GABPAQ06546 454 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 RRP1BQ14684 758 aaKnown RBP14.18□□□□□ -0.14
HDAC4-216ENST00000544989 SMC5Q8IY18 1101 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 ARPP21Q9UBL0 812 aaPredicted RBP14.18□□□□□ -0.14
HDAC4-216ENST00000544989 PTPN22Q9Y2R2 807 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 NAV1Q8NEY1 1877 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 ATAD5Q96QE3 1844 aa14.18□□□□□ -0.14
HDAC4-216ENST00000544989 BCRP11274 1271 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 SHMT1P34896 483 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 MTMR2Q13614 643 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 SLC4A8Q2Y0W8 1093 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 TSHZ3Q63HK5 1081 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 USP17L2Q6R6M4 530 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 EXOC6Q8TAG9 804 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 GTF3C2Q8WUA4 911 aaPredicted RBP14.17□□□□□ -0.14
HDAC4-216ENST00000544989 CCDC17Q96LX7 622 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 STRBPQ96SI9 672 aaKnown RBP14.17□□□□□ -0.14
HDAC4-216ENST00000544989 FSD1Q9BTV5 496 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 PUS7LQ9H0K6 701 aaKnown RBP14.17□□□□□ -0.14
HDAC4-216ENST00000544989 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.17□□□□□ -0.14
HDAC4-216ENST00000544989 CPA4Q9UI42 421 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 A0A0C4DFX4 3053 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 PTPRFP10586 1907 aa14.17□□□□□ -0.14
HDAC4-216ENST00000544989 SALL3Q9BXA9 1300 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 DDX60LQ5H9U9 1706 aaKnown RBP14.16□□□□□ -0.14
HDAC4-216ENST00000544989 CYP2C8P10632 490 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 HOXA7P31268 230 aaPredicted RBP14.16□□□□□ -0.14
HDAC4-216ENST00000544989 PDE1AP54750 535 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 FCGRTP55899 365 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 IRX3P78415 501 aaPredicted RBP14.16□□□□□ -0.14
HDAC4-216ENST00000544989 RAB3GAP1Q15042 981 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 C12orf60Q5U649 245 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 NBPF11Q86T75 865 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 CCDC84Q86UT8 332 aaPredicted RBP14.16□□□□□ -0.14
HDAC4-216ENST00000544989 EVI5LQ96CN4 794 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 FEZ1Q99689 392 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 NACAP1Q9BZK3 213 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 ZNF287Q9HBT7 754 aa14.16□□□□□ -0.14
HDAC4-216ENST00000544989 CEP290O15078 2479 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 USP17L12C9JPN9 530 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 USP17L21D6R901 530 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 PRKAB2O43741 272 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 PSMC4P43686 418 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 FAM110CQ1W6H9 321 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 SBK1Q52WX2 424 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 TREML2Q5T2D2 321 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 TMEM179Q6ZVK1 233 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 OTUD7AQ8TE49 926 aaPredicted RBP14.15□□□□□ -0.14
HDAC4-216ENST00000544989 OSBP2Q969R2 916 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 SH2D4AQ9H788 454 aa14.15□□□□□ -0.14
HDAC4-216ENST00000544989 LOC285556D6RIA3 1793 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 MPHOSPH10O00566 681 aaKnown RBP14.14□□□□□ -0.15
HDAC4-216ENST00000544989 GPAA1O43292 621 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 FMNL1O95466 1100 aaPredicted RBP14.14□□□□□ -0.15
HDAC4-216ENST00000544989 NUCB1Q02818 461 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 SLFNL1Q499Z3 407 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 CTR9Q6PD62 1173 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 C16orf86Q6ZW13 317 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 CHD1LQ86WJ1 897 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 C12orf42Q96LP6 360 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms