RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 RBPJLQ9UBG7 517 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 HDAC5Q9UQL6 1122 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 AKAP2Q9Y2D5 859 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 RLFQ13129 1914 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 IRX3P78415 501 aaPredicted RBP15.85■□□□□ 0.13
USP28-212ENST00000544750 LRRC26Q2I0M4 334 aa15.85■□□□□ 0.13
USP28-212ENST00000544750 MORN1Q5T089 497 aa15.85■□□□□ 0.13
USP28-212ENST00000544750 GPRC5AQ8NFJ5 357 aa15.85■□□□□ 0.13
USP28-212ENST00000544750 PI4KBQ9UBF8 816 aa15.85■□□□□ 0.13
USP28-212ENST00000544750 NOB1Q9ULX3 412 aaKnown RBP15.85■□□□□ 0.13
USP28-212ENST00000544750 C19orf81C9J6K1 198 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 POTEB2H3BUK9 544 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 CCER2I3L3R5 266 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 ASNSP08243 561 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 CCND3P30281 292 aaPredicted RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 MCAMP43121 646 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 CCL14Q16627 93 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 SHROOM1Q2M3G4 852 aaPredicted RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 TEX11Q8IYF3 940 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 TRMT44Q8IYL2 757 aaKnown RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 SH3RF3Q8TEJ3 882 aaPredicted RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 CDCA7LQ96GN5 454 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 COL25A1Q9BXS0 654 aaPredicted RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 PORCNQ9H237 461 aa15.84■□□□□ 0.13
USP28-212ENST00000544750 DHX36Q9H2U1 1008 aaKnown RBP15.84■□□□□ 0.13
USP28-212ENST00000544750 EYSQ5T1H1 3165 aa15.83■□□□□ 0.13
USP28-212ENST00000544750 MAPK4P31152 587 aa15.83■□□□□ 0.12
USP28-212ENST00000544750 ERVK-9P63128 1117 aa15.83■□□□□ 0.12
USP28-212ENST00000544750 ERVK-24P63145 666 aa15.83■□□□□ 0.12
USP28-212ENST00000544750 FAM109BQ6ICB4 259 aaPredicted RBP15.83■□□□□ 0.12
USP28-212ENST00000544750 GPR142Q7Z601 462 aa15.83■□□□□ 0.12
USP28-212ENST00000544750 RAI14Q9P0K7 980 aa15.83■□□□□ 0.12
USP28-212ENST00000544750 VCANP13611 3396 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 USP17L10C9JJH3 530 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 SRGAP3O43295 1099 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 ZKSCAN1P17029 563 aaPredicted RBP15.82■□□□□ 0.12
USP28-212ENST00000544750 PPP4CP60510 307 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 NEUROD6Q96NK8 337 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 GUCD1Q96NT3 240 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 API5Q9BZZ5 524 aaKnown RBP15.82■□□□□ 0.12
USP28-212ENST00000544750 GINM1Q9NU53 330 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 TMOD4Q9NZQ9 345 aa15.82■□□□□ 0.12
USP28-212ENST00000544750 CT47B1P0C2W7 299 aaPredicted RBP15.81■□□□□ 0.12
USP28-212ENST00000544750 RGS2P41220 211 aa15.81■□□□□ 0.12
USP28-212ENST00000544750 MDM2Q00987 491 aaPredicted RBP15.81■□□□□ 0.12
USP28-212ENST00000544750 DIEXFQ68CQ4 756 aaKnown RBP15.81■□□□□ 0.12
USP28-212ENST00000544750 FOXP4Q8IVH2 680 aaPredicted RBP15.81■□□□□ 0.12
USP28-212ENST00000544750 APBA2Q99767 749 aa15.81■□□□□ 0.12
USP28-212ENST00000544750 EMILIN3Q9NT22 766 aa15.81■□□□□ 0.12
USP28-212ENST00000544750 SPTBN5Q9NRC6 3674 aaKnown RBP15.81■□□□□ 0.12
USP28-212ENST00000544750 FLT1P17948 1338 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 CNMDO75829 334 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 GDF11O95390 407 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 PDE3AQ14432 1141 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 PLEKHH3Q7Z736 793 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 ADGRA1Q86SQ6 560 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 GTF3C2Q8WUA4 911 aaPredicted RBP15.8■□□□□ 0.12
USP28-212ENST00000544750 AATFQ9NY61 560 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP28-212ENST00000544750 ZBTB21Q9ULJ3 1066 aa15.8■□□□□ 0.12
USP28-212ENST00000544750 PRUNE2Q8WUY3 3088 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 IGHA2P01877 340 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 GNAI3P08754 354 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 MAPKAPK5Q8IW41 473 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 TGFBRAP1Q8WUH2 860 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 C12orf42Q96LP6 360 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 FLRT1Q9NZU1 646 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 LRP2BPQ9P2M1 347 aa15.79■□□□□ 0.12
USP28-212ENST00000544750 ZNFX1Q9P2E3 1918 aaKnown RBP15.78■□□□□ 0.12
USP28-212ENST00000544750 ZNF236Q9UL36 1845 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 BAG3O95817 575 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 UQCRFS1P1P0C7P4 283 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 PLCG2P16885 1265 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 MAP2K5Q13163 448 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 GORABQ5T7V8 394 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 NAA16Q6N069 864 aaPredicted RBP15.78■□□□□ 0.12
USP28-212ENST00000544750 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP28-212ENST00000544750 MIER1Q8N108 512 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 PAGR1Q9BTK6 254 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 PALD1Q9ULE6 856 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 RABGAP1Q9Y3P9 1069 aa15.78■□□□□ 0.12
USP28-212ENST00000544750 SMCHD1A6NHR9 2005 aa15.77■□□□□ 0.12
USP28-212ENST00000544750 HOXC6P09630 235 aa15.77■□□□□ 0.12
USP28-212ENST00000544750 USP17L2Q6R6M4 530 aa15.77■□□□□ 0.12
USP28-212ENST00000544750 ARHGAP45Q92619 1136 aa15.77■□□□□ 0.12
USP28-212ENST00000544750 EDC3Q96F86 508 aaKnown RBP15.77■□□□□ 0.12
USP28-212ENST00000544750 CDH23Q9H251 3354 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 PNMA6EA0A0J9YXQ4 647 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 CYP2E1P05181 493 aaPredicted RBP15.76■□□□□ 0.11
USP28-212ENST00000544750 TATDN1Q6P1N9 297 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 LBX2Q6XYB7 198 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 CRACR2BQ8N4Y2 399 aaPredicted RBP15.76■□□□□ 0.11
USP28-212ENST00000544750 NOL10Q9BSC4 688 aaKnown RBP15.76■□□□□ 0.11
USP28-212ENST00000544750 SENP6Q9GZR1 1112 aaPredicted RBP15.76■□□□□ 0.11
USP28-212ENST00000544750 SNRKQ9NRH2 765 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 A0A0G2JMZ2 1700 aa15.76■□□□□ 0.11
USP28-212ENST00000544750 PARP14Q460N5 1801 aa15.75■□□□□ 0.11
USP28-212ENST00000544750 SLC15A5A6NIM6 579 aa15.75■□□□□ 0.11
USP28-212ENST00000544750 IGSF3O75054 1194 aa15.75■□□□□ 0.11
USP28-212ENST00000544750 PTPREP23469 700 aa15.75■□□□□ 0.11
USP28-212ENST00000544750 RARSP54136 660 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms