RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 MAP2K2P36507 400 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 HAUS3Q68CZ6 603 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 TACO1Q9BSH4 297 aaKnown RBP11.52□□□□□ -0.57
PCDH9-204ENST00000544246 TRIM35Q9UPQ4 493 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 PTPN23Q9H3S7 1636 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 RNF113AO15541 343 aaKnown RBP11.52□□□□□ -0.57
PCDH9-204ENST00000544246 BAG2O95816 211 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 SLC9C1Q4G0N8 1177 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 MGARPQ8TDB4 240 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 TTC21BQ7Z4L5 1316 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 CHMP2AO43633 222 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 DKC1O60832 514 aaKnown RBP eCLIP11.52□□□□□ -0.57
PCDH9-204ENST00000544246 XRCC6P12956 609 aaKnown RBP eCLIP11.52□□□□□ -0.57
PCDH9-204ENST00000544246 MX2P20592 715 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 APOBRQ0VD83 1088 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 MORC4Q8TE76 937 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 SPDL1Q96EA4 605 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 CARD10Q9BWT7 1032 aa11.52□□□□□ -0.57
PCDH9-204ENST00000544246 PTPDC1A2A3K4 754 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 PHBP35232 272 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 PALM2Q8IXS6 379 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 VPS16Q9H269 839 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 ZNF174Q15697 407 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD42Q8N9B4 389 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 LRGUKQ96M69 825 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 TPX2Q9ULW0 747 aaKnown RBP11.51□□□□□ -0.57
PCDH9-204ENST00000544246 IL15P40933 162 aaPredicted RBP11.51□□□□□ -0.57
PCDH9-204ENST00000544246 ATL3Q6DD88 541 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD13DQ6ZTN6 518 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 DUOX2Q9NRD8 1548 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 KCNA6P17658 529 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 LETM2Q2VYF4 491 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 NME9Q86XW9 330 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 KRT12Q99456 494 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 TRIM4Q9C037 500 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 EFCC1Q9HA90 598 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
PCDH9-204ENST00000544246 KLHL14Q9P2G3 628 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 PPP1R9AQ9ULJ8 1098 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 SYNRGQ9UMZ2 1314 aa11.51□□□□□ -0.57
PCDH9-204ENST00000544246 CFAP221Q4G0U5 840 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 MICAL1Q8TDZ2 1067 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 RSAD2Q8WXG1 361 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 NLRP3Q96P20 1036 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 NYXQ9GZU5 481 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 RAB17Q9H0T7 212 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 ESYT2A0FGR8 921 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 LUC7L3O95232 432 aaKnown RBP11.5□□□□□ -0.57
PCDH9-204ENST00000544246 MAGEB6Q8N7X4 407 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 TTC4O95801 387 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 RBM26Q5T8P6 1007 aaKnown RBP11.5□□□□□ -0.57
PCDH9-204ENST00000544246 SPDYE16A6NNV3 312 aaPredicted RBP11.5□□□□□ -0.57
PCDH9-204ENST00000544246 PRPF6O94906 941 aaKnown RBP11.5□□□□□ -0.57
PCDH9-204ENST00000544246 OATP04181 439 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 IL1RL1Q01638 556 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 SPDYE2Q495Y8 402 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 CCDC13Q8IYE1 715 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 SCYL1Q96KG9 808 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 RAD51AP2Q09MP3 1159 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 CERKQ8TCT0 537 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 TMOD4Q9NZQ9 345 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 RIPOR2Q9Y4F9 1068 aa11.5□□□□□ -0.57
PCDH9-204ENST00000544246 ARHGEF35A5YM69 484 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 PALM3A6NDB9 673 aaPredicted RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 PFDN6O15212 129 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 HIP1RO75146 1068 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 GSTA1P08263 222 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 GSTA2P09210 222 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 BCRP11274 1271 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD20A4Q4UJ75 823 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD20A8PQ5CZ79 823 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD20A2Q5SQ80 823 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 ANKRD20A1Q5TYW2 823 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 LCA5Q86VQ0 697 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 LARSQ9P2J5 1176 aaKnown RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 CD2APQ9Y5K6 639 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 RGS16O15492 202 aaPredicted RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 CCNT1O60563 726 aaKnown RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 RPS6KA1Q15418 735 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 BSPRYQ5W0U4 402 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 EMILIN1Q9Y6C2 1016 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 YWHAEP62258 255 aaKnown RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 ARHGAP4P98171 946 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 CTAGE3PQ8IX95 158 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 CSGALNACT2Q8N6G5 542 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 OAS2P29728 719 aaKnown RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 GABPB1Q06547 395 aaPredicted RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 PAK1Q13153 545 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 CARD6Q9BX69 1037 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 GOLGA8CPA6NN73 597 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 APOEP02649 317 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 S100BP04271 92 aaPredicted RBP11.49□□□□□ -0.57
PCDH9-204ENST00000544246 P4HA1P13674 534 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 LONRF2Q1L5Z9 754 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 HSP90AA5PQ58FG0 334 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 BEND3Q5T5X7 828 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 STAG1Q8WVM7 1258 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 MBIPQ9NS73 344 aa11.49□□□□□ -0.57
PCDH9-204ENST00000544246 NOP56O00567 594 aaKnown RBP11.48□□□□□ -0.57
PCDH9-204ENST00000544246 PFDN1O60925 122 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms