RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	CXCL11	O14625	94 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	FKTN	O75072	461 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	NEFL	P07196	543 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	ASNS	P08243	561 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	JAG1	P78504	1218 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	ZYX	Q15942	572 aa	Known RBP	13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	ABCB5	Q2M3G0	1257 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	FASTKD5	Q7L8L6	764 aa	Known RBP	13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	ZNF280C	Q8ND82	737 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	CDK5RAP2	Q96SN8	1893 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	SMIM22	K7EJ46	135 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	HMGCS2	P54868	508 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	CTR9	Q6PD62	1173 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	SLC44A5	Q8NCS7	719 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	FEZ1	Q99689	392 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	TMOD4	Q9NZQ9	345 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	CPA4	Q9UI42	421 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	ZBTB21	Q9ULJ3	1066 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627	KCNH4	Q9UQ05	1017 aa		13.24	□□□□□ -0.29
DDB1-222	ENST00000543627		A0A0G2JLL6	359 aa	Predicted RBP	13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	GSG1L2	A8MUP6	293 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	PATL2	C9JE40	543 aa	Known RBP	13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	CYP2C8	P10632	490 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	ATP2B2	Q01814	1243 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	MTMR2	Q13614	643 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	ANKRD23	Q86SG2	305 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	CD99L2	Q8TCZ2	262 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	EHD4	Q9H223	541 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	MYH7	P12883	1935 aa		13.23	□□□□□ -0.29
DDB1-222	ENST00000543627	RAD21	O60216	631 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	GNAT2	P19087	354 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	PDE4A	P27815	886 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	SHMT1	P34896	483 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	CDK8	P49336	464 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	SP3	Q02447	781 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	ZMYM1	Q5SVZ6	1142 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	C12orf60	Q5U649	245 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	GPAT2	Q6NUI2	795 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	TATDN1	Q6P1N9	297 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	CTU1	Q7Z7A3	348 aa	Known RBP	13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	METTL16	Q86W50	562 aa	Known RBP	13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	FAM227B	Q96M60	508 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	NACAP1	Q9BZK3	213 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	MCOLN1	Q9GZU1	580 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	NAPB	Q9H115	298 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	MKNK2	Q9HBH9	465 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	TRIM17	Q9Y577	477 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	FOCAD	Q5VW36	1801 aa		13.22	□□□□□ -0.29
DDB1-222	ENST00000543627	NAV1	Q8NEY1	1877 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	CCDC85C	A6NKD9	419 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	USP17L10	C9JJH3	530 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	NMI	Q13287	307 aa	Predicted RBP	13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	MOGS	Q13724	837 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	KIF22	Q14807	665 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	SEPT2	Q15019	361 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	TREML2	Q5T2D2	321 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	IFNL3	Q8IZI9	196 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	PARK7	Q99497	189 aa	Known RBP	13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	SWAP70	Q9UH65	585 aa		13.21	□□□□□ -0.29
DDB1-222	ENST00000543627	DOCK1	Q14185	1865 aa		13.21	□□□□□ -0.3
DDB1-222	ENST00000543627	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	TLR2	O60603	784 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	CENPB	P07199	599 aa	Predicted RBP	13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	AKR1B1	P15121	316 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	SDS	P20132	328 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	OSBP	P22059	807 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	BACE1	P56817	501 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	GABPA	Q06546	454 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	MCMDC2	Q4G0Z9	681 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	CWC27	Q6UX04	472 aa	Known RBP	13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	ACER1	Q8TDN7	264 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	ERO1A	Q96HE7	468 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	WDR18	Q9BV38	432 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	TBC1D2	Q9BYX2	928 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	HELLS	Q9NRZ9	838 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	DIAPH3	Q9NSV4	1193 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	SIPA1L1	O43166	1804 aa		13.2	□□□□□ -0.3
DDB1-222	ENST00000543627	ATAD5	Q96QE3	1844 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627		A0A0D9SFI3	127 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	PRDM1	O75626	825 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	IRX3	P78415	501 aa	Predicted RBP	13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	VPS53	Q5VIR6	699 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	USP17L2	Q6R6M4	530 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	CLEC10A	Q8IUN9	316 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	ABHD8	Q96I13	439 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	CCDC136	Q96JN2	1154 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	CFHR5	Q9BXR6	569 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	OSBPL3	Q9H4L5	887 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	EFCC1	Q9HA90	598 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	GINM1	Q9NU53	330 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	AGTPBP1	Q9UPW5	1226 aa		13.19	□□□□□ -0.3
DDB1-222	ENST00000543627	C19orf81	C9J6K1	198 aa		13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	FMNL1	O95466	1100 aa	Predicted RBP	13.18	□□□□□ -0.3
DDB1-222	ENST00000543627	SLC3A2	P08195	630 aa	Known RBP	13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms