RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NBPF3	Q9H094	633 aa		12.01	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZNF112	Q9UJU3	913 aa		12.01	□□□□□ -0.49
CPSF7-221	ENST00000543545		B4E1Z4	1266 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	KDM4A	O75164	1064 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	GH2	P01242	217 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	AKR1B1	P15121	316 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	RASA1	P20936	1047 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	ATP2B2	Q01814	1243 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	RRP1B	Q14684	758 aa	Known RBP	12	□□□□□ -0.49
CPSF7-221	ENST00000543545	RAB3GAP1	Q15042	981 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12	□□□□□ -0.49
CPSF7-221	ENST00000543545	SCYL3	Q8IZE3	742 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	12	□□□□□ -0.49
CPSF7-221	ENST00000543545	JAKMIP1	Q96N16	626 aa	Known RBP	12	□□□□□ -0.49
CPSF7-221	ENST00000543545	NEK1	Q96PY6	1258 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	ELP3	Q9H9T3	547 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	12	□□□□□ -0.49
CPSF7-221	ENST00000543545	SNX14	Q9Y5W7	946 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	TACC3	Q9Y6A5	838 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	TAF6L	Q9Y6J9	622 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	NEDD4	P46934	1319 aa		12	□□□□□ -0.49
CPSF7-221	ENST00000543545	ASNS	P08243	561 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	FGR	P09769	529 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	PSMA5	P28066	241 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	APLP1	P51693	650 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	VGLL4	Q14135	290 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	MAP3K11	Q16584	847 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	LDLRAD1	Q5T700	205 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	STOX1	Q6ZVD7	989 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	TMEM179	Q6ZVK1	233 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	CLMN	Q96JQ2	1002 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZBTB21	Q9ULJ3	1066 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	ROBO3	Q96MS0	1386 aa		11.99	□□□□□ -0.49
CPSF7-221	ENST00000543545	SSC5D	A1L4H1	1573 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	USP17L5	A8MUK1	530 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZNF157	P51786	506 aa	Predicted RBP	11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	JAG1	P78504	1218 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	SEPT2	Q15019	361 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	SHROOM1	Q2M3G4	852 aa	Predicted RBP	11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	TSGA10IP	Q3SY00	556 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	IQCA1	Q86XH1	822 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	NEDD1	Q8NHV4	660 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	KCNB2	Q92953	911 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	UBAC1	Q9BSL1	405 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	GINM1	Q9NU53	330 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZHX2	Q9Y6X8	837 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	MYH7	P12883	1935 aa		11.98	□□□□□ -0.49
CPSF7-221	ENST00000543545	ERICH2	A1L162	156 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	UNCX	A6NJT0	531 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	HMGB1	P09429	215 aa	Known RBP	11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	PTPRA	P18433	802 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	MCM5	P33992	734 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	NT5C2	P49902	561 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	FGD1	P98174	961 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	GRM1	Q13255	1194 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	SART3	Q15020	963 aa	Known RBP	11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	ADCK5	Q3MIX3	580 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	CCDC178	Q5BJE1	867 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	NOL9	Q5SY16	702 aa	Known RBP	11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	BLOC1S2	Q6QNY1	142 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	CHST3	Q7LGC8	479 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	SAPCD2	Q86UD0	394 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	CCDC84	Q86UT8	332 aa	Predicted RBP	11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	FEZ1	Q99689	392 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZKSCAN3	Q9BRR0	538 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	KANSL2	Q9H9L4	492 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	AS3MT	Q9HBK9	375 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	ZSWIM5	Q9P217	1185 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	SNCAIP	Q9Y6H5	919 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	TLL2	Q9Y6L7	1015 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	AK9	Q5TCS8	1911 aa		11.97	□□□□□ -0.49
CPSF7-221	ENST00000543545	IFIT3	O14879	490 aa	Known RBP	11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	PRC1	O43663	620 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	RAD21	O60216	631 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	NMT2	O60551	498 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	CAST	P20810	708 aa	Known RBP	11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	ANAPC15	P60006	121 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	C1QTNF8	P60827	252 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	ICA1	Q05084	483 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	MKRN3	Q13064	507 aa	Known RBP	11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	PPP4R3B	Q5MIZ7	849 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	RGMB	Q6NW40	437 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	CYB5R4	Q7L1T6	521 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	DHX32	Q7L7V1	743 aa	Known RBP	11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	ERO1B	Q86YB8	467 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	CLEC10A	Q8IUN9	316 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	OPTN	Q96CV9	577 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	OTUD5	Q96G74	571 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	CREBZF	Q9NS37	354 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	CLIP2	Q9UDT6	1046 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	STX8	Q9UNK0	236 aa		11.96	□□□□□ -0.49
CPSF7-221	ENST00000543545	TRIM75P	A6NK02	468 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	EEF2	P13639	858 aa	Known RBP	11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	CPA1	P15085	419 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	GUCY1A2	P33402	732 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	PPAT	Q06203	517 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	SPP2	Q13103	211 aa		11.95	□□□□□ -0.5
CPSF7-221	ENST00000543545	DEFB115	Q30KQ5	88 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms