RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 ZNF202O95125 648 aa21.4■■□□□ 1.02
HDAC4-215ENST00000543185 PSMD6Q15008 389 aa21.4■■□□□ 1.02
HDAC4-215ENST00000543185 TOPBP1Q92547 1522 aa21.4■■□□□ 1.02
HDAC4-215ENST00000543185 YWHAEP62258 255 aaKnown RBP21.4■■□□□ 1.02
HDAC4-215ENST00000543185 TUBB6Q9BUF5 446 aa21.4■■□□□ 1.02
HDAC4-215ENST00000543185 RIC8AQ9NPQ8 531 aa21.39■■□□□ 1.02
HDAC4-215ENST00000543185 SEPT10Q9P0V9 454 aa21.39■■□□□ 1.02
HDAC4-215ENST00000543185 CARD6Q9BX69 1037 aa21.39■■□□□ 1.02
HDAC4-215ENST00000543185 IBTKQ9P2D0 1353 aaPredicted RBP21.39■■□□□ 1.02
HDAC4-215ENST00000543185 MAGEB6P1A0A0J9YX57 407 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 BAG5Q9UL15 447 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 ARHGAP42A6NI28 874 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 DKC1O60832 514 aaKnown RBP eCLIP21.39■■□□□ 1.014e-7■■■■■ 35.8
HDAC4-215ENST00000543185 PTCD1O75127 700 aaKnown RBP21.39■■□□□ 1.01
HDAC4-215ENST00000543185 RASIP1Q5U651 963 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 FBXO41Q8TF61 875 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 SCOCQ9UIL1 159 aa21.39■■□□□ 1.01
HDAC4-215ENST00000543185 AMFRQ9UKV5 643 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 RPS6KA2Q15349 733 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 WDR46O15213 610 aaKnown RBP21.38■■□□□ 1.01
HDAC4-215ENST00000543185 NMIQ13287 307 aaPredicted RBP21.38■■□□□ 1.01
HDAC4-215ENST00000543185 TRIM42Q8IWZ5 723 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 TEKT1Q969V4 418 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 PSDA5PKW4 1024 aaPredicted RBP21.38■■□□□ 1.01
HDAC4-215ENST00000543185 STX17P56962 302 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 NLRP7Q8WX94 980 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 A0A1B0GVL5 298 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 TSHZ3Q63HK5 1081 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 BCL2L12Q9HB09 334 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 RPS6KB1P23443 525 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 LRRC23Q53EV4 343 aaPredicted RBP21.38■■□□□ 1.01
HDAC4-215ENST00000543185 PHEXP78562 749 aa21.38■■□□□ 1.01
HDAC4-215ENST00000543185 POLR3AO14802 1390 aaPredicted RBP21.38■■□□□ 1.01
HDAC4-215ENST00000543185 SH2D4AQ9H788 454 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 AMOTL2Q9Y2J4 779 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 PARP1P09874 1014 aaKnown RBP21.37■■□□□ 1.01
HDAC4-215ENST00000543185 CYP7A1P22680 504 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 SLC9C2Q5TAH2 1124 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 PPP1R21Q6ZMI0 780 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 TSC1Q92574 1164 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 MIS12Q9H081 205 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 SCINQ9Y6U3 715 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 CDC25BP30305 580 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 NSMCE1Q8WV22 266 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 EFHD1Q9BUP0 239 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 GON4LQ3T8J9 2241 aa21.37■■□□□ 1.01
HDAC4-215ENST00000543185 POLR2DO15514 142 aaKnown RBP21.36■■□□□ 1.01
HDAC4-215ENST00000543185 ANGEL1Q9UNK9 670 aaKnown RBP21.36■■□□□ 1.01
HDAC4-215ENST00000543185 SKIP12755 728 aa21.36■■□□□ 1.01
HDAC4-215ENST00000543185 LMNB2Q03252 620 aa21.36■■□□□ 1.01
HDAC4-215ENST00000543185 PFDN6O15212 129 aa21.36■■□□□ 1.01
HDAC4-215ENST00000543185 CLTAP09496 248 aa21.36■■□□□ 1.01
HDAC4-215ENST00000543185 GNGT1P63211 74 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 HELBQ8NG08 1087 aaPredicted RBP21.35■■□□□ 1.01
HDAC4-215ENST00000543185 SPECC1L-ADORA2AF8WAN1 911 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 DCUN1D2Q6PH85 259 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 KDM3AQ9Y4C1 1321 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 IGSF3O75054 1194 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 TTLL12Q14166 644 aaPredicted RBP21.35■■□□□ 1.01
HDAC4-215ENST00000543185 CBX8Q9HC52 389 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 THAP12O43422 761 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 P4HA1P13674 534 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 BIRC3Q13489 604 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 CCDC197Q8NCU1 140 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 SERPINB6P35237 376 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 TRIML1Q8N9V2 468 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 CXorf38Q8TB03 319 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 TCP1P17987 556 aaKnown RBP21.35■■□□□ 1.01
HDAC4-215ENST00000543185 IWS1Q96ST2 819 aa21.35■■□□□ 1.01
HDAC4-215ENST00000543185 ADGRL1O94910 1474 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 BCAS4Q8TDM0 211 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CTTNBP2NLQ9P2B4 639 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CHMLP26374 656 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 PEX19P40855 299 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 PLEKHM2Q8IWE5 1019 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 DAPK3O43293 454 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CCNT1O60563 726 aaKnown RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 IL9RQ01113 521 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 SND1Q7KZF4 910 aaKnown RBP eCLIP21.34■■□□□ 1.012e-7■■■■■ 27.5
HDAC4-215ENST00000543185 INSRP06213 1382 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 NBPF9Q3BBW0 867 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 MPRIPQ6WCQ1 1025 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 LRRC2Q9BYS8 371 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 BZW2Q9Y6E2 419 aaKnown RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 GOLGA8CPA6NN73 597 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 KIF1CO43896 1103 aaKnown RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CEP104O60308 925 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 ZNF277Q9NRM2 450 aaPredicted RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 PCDHB15Q9Y5E8 787 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CCDC13Q8IYE1 715 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 PDCD7Q8N8D1 485 aaKnown RBP21.34■■□□□ 1.01
HDAC4-215ENST00000543185 PASKQ96RG2 1323 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 TTC4O95801 387 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 CCHCR1Q8TD31 782 aa21.34■■□□□ 1.01
HDAC4-215ENST00000543185 KRT9P35527 623 aa21.33■■□□□ 1.01
HDAC4-215ENST00000543185 TNNI2P48788 182 aa21.33■■□□□ 1.01
HDAC4-215ENST00000543185 RSAD2Q8WXG1 361 aa21.33■■□□□ 1.01
HDAC4-215ENST00000543185 HYOU1Q9Y4L1 999 aa21.33■■□□□ 1.01
HDAC4-215ENST00000543185 CASC4Q6P4E1 433 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms