RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 IGSF3O75054 1194 aa18.9■□□□□ 0.62
RTN3-211ENST00000542238 CYP2B6P20813 491 aa18.9■□□□□ 0.62
RTN3-211ENST00000542238 CCAR1Q8IX12 1150 aaKnown RBP18.9■□□□□ 0.62
RTN3-211ENST00000542238 C7orf61Q8IZ16 206 aa18.9■□□□□ 0.62
RTN3-211ENST00000542238 NUDT12Q9BQG2 462 aa18.9■□□□□ 0.62
RTN3-211ENST00000542238 FLT1P17948 1338 aa18.9■□□□□ 0.62
RTN3-211ENST00000542238 DDX60LQ5H9U9 1706 aaKnown RBP18.89■□□□□ 0.61
RTN3-211ENST00000542238 BCAR3O75815 825 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 HLA-DOAP06340 250 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 HERVK_113P62684 666 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 TRIM32Q13049 653 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 PDE3AQ14432 1141 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 METTL16Q86W50 562 aaKnown RBP18.89■□□□□ 0.61
RTN3-211ENST00000542238 TRMT44Q8IYL2 757 aaKnown RBP18.89■□□□□ 0.61
RTN3-211ENST00000542238 SOCS4Q8WXH5 440 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 TRIB2Q92519 343 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 DBNDD2Q9BQY9 259 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 PALD1Q9ULE6 856 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 TNNQ9UQP3 1299 aa18.89■□□□□ 0.61
RTN3-211ENST00000542238 CCER2I3L3R5 266 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 GDF11O95390 407 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 CYP2E1P05181 493 aaPredicted RBP18.88■□□□□ 0.61
RTN3-211ENST00000542238 XRCC5P13010 732 aaKnown RBP18.88■□□□□ 0.61
RTN3-211ENST00000542238 MAPK4P31152 587 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 POLA2Q14181 598 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 ADGRA1Q86SQ6 560 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 GTF3C2Q8WUA4 911 aaPredicted RBP18.88■□□□□ 0.61
RTN3-211ENST00000542238 ZNF512BQ96KM6 892 aaPredicted RBP18.88■□□□□ 0.61
RTN3-211ENST00000542238 C11orf49Q9H6J7 331 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 DNAJC18Q9H819 358 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 MYH1P12882 1939 aa18.88■□□□□ 0.61
RTN3-211ENST00000542238 SURF6O75683 361 aaKnown RBP18.87■□□□□ 0.61
RTN3-211ENST00000542238 PRKAR2AP13861 404 aaKnown RBP18.87■□□□□ 0.61
RTN3-211ENST00000542238 BMP8BP34820 402 aa18.87■□□□□ 0.61
RTN3-211ENST00000542238 ZKSCAN2Q63HK3 967 aa18.87■□□□□ 0.61
RTN3-211ENST00000542238 TXNRD2Q9NNW7 524 aa18.87■□□□□ 0.61
RTN3-211ENST00000542238 SAP30BPQ9UHR5 308 aaKnown RBP18.87■□□□□ 0.61
RTN3-211ENST00000542238 OGDHLQ9ULD0 1010 aa18.87■□□□□ 0.61
RTN3-211ENST00000542238 ZBTB21Q9ULJ3 1066 aa18.87■□□□□ 0.61
RTN3-211ENST00000542238 SOX1O00570 391 aaPredicted RBP18.86■□□□□ 0.61
RTN3-211ENST00000542238 ZKSCAN1P17029 563 aaPredicted RBP18.86■□□□□ 0.61
RTN3-211ENST00000542238 ZAP70P43403 619 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 JAG1P78504 1218 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 ATP8B2P98198 1209 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 USP17L2Q6R6M4 530 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 TMEM57Q8N5G2 664 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 SSH3Q8TE77 659 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 GDF15Q99988 308 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 CWC22Q9HCG8 908 aaKnown RBP18.86■□□□□ 0.61
RTN3-211ENST00000542238 RBPJLQ9UBG7 517 aa18.86■□□□□ 0.61
RTN3-211ENST00000542238 ZMYND8Q9ULU4 1186 aaPredicted RBP18.86■□□□□ 0.61
RTN3-211ENST00000542238 CYP7A1P22680 504 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 RGS2P41220 211 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 ERVK-9P63128 1117 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 ERVK-24P63145 666 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 MAP3K21Q5TCX8 1036 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 CERS3Q8IU89 383 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 LRCH3Q96II8 777 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 PAGR1Q9BTK6 254 aa18.85■□□□□ 0.61
RTN3-211ENST00000542238 PEX10O60683 326 aa18.84■□□□□ 0.61
RTN3-211ENST00000542238 SHROOM1Q2M3G4 852 aaPredicted RBP18.84■□□□□ 0.61
RTN3-211ENST00000542238 PLEKHH3Q7Z736 793 aa18.84■□□□□ 0.61
RTN3-211ENST00000542238 SLC17A8Q8NDX2 589 aa18.84■□□□□ 0.61
RTN3-211ENST00000542238 FEZ1Q99689 392 aa18.84■□□□□ 0.61
RTN3-211ENST00000542238 PIH1D3Q9NQM4 214 aaKnown RBP18.84■□□□□ 0.61
RTN3-211ENST00000542238 IDH1O75874 414 aaKnown RBP18.83■□□□□ 0.6
RTN3-211ENST00000542238 GH2P01242 217 aa18.83■□□□□ 0.6
RTN3-211ENST00000542238 USP5P45974 858 aa18.83■□□□□ 0.6
RTN3-211ENST00000542238 MNX1P50219 401 aaPredicted RBP18.83■□□□□ 0.6
RTN3-211ENST00000542238 DYNLL1P63167 89 aaKnown RBP18.83■□□□□ 0.6
RTN3-211ENST00000542238 CACNB2Q08289 660 aaPredicted RBP18.83■□□□□ 0.6
RTN3-211ENST00000542238 Q3C1V9 767 aa18.83■□□□□ 0.6
RTN3-211ENST00000542238 GPR142Q7Z601 462 aa18.83■□□□□ 0.6
RTN3-211ENST00000542238 EMILIN3Q9NT22 766 aa18.83■□□□□ 0.6
RTN3-211ENST00000542238 GLRX3O76003 335 aaKnown RBP18.82■□□□□ 0.6
RTN3-211ENST00000542238 SYN1P17600 705 aa18.82■□□□□ 0.6
RTN3-211ENST00000542238 CCNA1P78396 465 aa18.82■□□□□ 0.6
RTN3-211ENST00000542238 FTSJ3Q8IY81 847 aaKnown RBP18.82■□□□□ 0.6
RTN3-211ENST00000542238 USP6NLQ92738 828 aa18.82■□□□□ 0.6
RTN3-211ENST00000542238 APBA2Q99767 749 aa18.82■□□□□ 0.6
RTN3-211ENST00000542238 PORCNQ9H237 461 aa18.82■□□□□ 0.6
RTN3-211ENST00000542238 DBNLQ9UJU6 430 aaKnown RBP18.82■□□□□ 0.6
RTN3-211ENST00000542238 NOP58Q9Y2X3 529 aaKnown RBP18.82■□□□□ 0.6
RTN3-211ENST00000542238 USP17L15C9J2P7 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L13C9JLJ4 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L11C9JVI0 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L18D6R9N7 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L22D6RA61 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L17D6RBQ6 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L19D6RCP7 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L20D6RJB6 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP14P54578 494 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 USP17L24Q0WX57 530 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 ZYXQ15942 572 aaKnown RBP18.81■□□□□ 0.6
RTN3-211ENST00000542238 MORN1Q5T089 497 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 GPR153Q6NV75 609 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 TATDN1Q6P1N9 297 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 TTC6Q86TZ1 520 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 MIGA1Q8NAN2 632 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 CCDC8Q9H0W5 538 aaPredicted RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms