RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ZFP91Q96JP5 570 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 MCM9Q9NXL9 1143 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 PUF60Q9UHX1 559 aaKnown RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 CUTAO60888 179 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 USP17L8P0C7I0 530 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 ARID4AP29374 1257 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 IL6STP40189 918 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 SYMPKQ92797 1274 aaKnown RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 CCDC34Q96HJ3 373 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 DIXDC1Q155Q3 683 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 CATIPQ7Z7H3 387 aa15.48■□□□□ 0.07
PTPN1-202ENST00000541713 MARCH10Q8NA82 808 aaPredicted RBP15.48■□□□□ 0.07
PTPN1-202ENST00000541713 TRIM75PA6NK02 468 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 PP2D1A8MPX8 630 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 ZSCAN20P17040 1043 aaPredicted RBP15.47■□□□□ 0.07
PTPN1-202ENST00000541713 CDC25BP30305 580 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 RBM6P78332 1123 aaKnown RBP15.47■□□□□ 0.07
PTPN1-202ENST00000541713 SHISA4Q96DD7 197 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 PLA2G12BQ9BX93 195 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 ANKIB1Q9P2G1 1089 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 SOWAHDA6NJG2 315 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 CTIFO43310 598 aaKnown RBP15.47■□□□□ 0.07
PTPN1-202ENST00000541713 IFNAR1P17181 557 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 FGFR2P21802 821 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 SKIDA1Q1XH10 827 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 NYAP1Q6ZVC0 841 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 ANKRD7Q92527 254 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 UBXN4Q92575 508 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 WDR24Q96S15 920 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 INTS13Q9NVM9 706 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 NEMFO60524 1076 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 EIF5P55010 431 aaKnown RBP15.47■□□□□ 0.07
PTPN1-202ENST00000541713 IQCA1Q86XH1 822 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 BAG1Q99933 345 aaPredicted RBP15.47■□□□□ 0.07
PTPN1-202ENST00000541713 TFR2Q9UP52 801 aa15.47■□□□□ 0.07
PTPN1-202ENST00000541713 EP400Q96L91 3159 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 MRC1P22897 1456 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 DEXIO95424 95 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 PTGDRQ13258 359 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 MAPK8IP2Q13387 824 aaPredicted RBP15.46■□□□□ 0.07
PTPN1-202ENST00000541713 CCDC150Q8NCX0 1101 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 CNNM2Q9H8M5 875 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 CTNND2Q9UQB3 1225 aa15.46■□□□□ 0.07
PTPN1-202ENST00000541713 TRPM3Q9HCF6 1732 aaPredicted RBP15.46■□□□□ 0.07
PTPN1-202ENST00000541713 FBXO2Q9UK22 296 aaPredicted RBP15.46■□□□□ 0.07
PTPN1-202ENST00000541713 KCPQ6ZWJ8 1503 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 EIF6P56537 245 aaKnown RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 RRAGBQ5VZM2 374 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 ZSCAN10Q96SZ4 725 aaPredicted RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 GNL3LQ9NVN8 582 aaKnown RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 CD44P16070 742 aaKnown RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 NBPF5PQ86XG9 351 aaPredicted RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 CCDC12Q8WUD4 166 aaPredicted RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 N4BP2Q86UW6 1770 aaPredicted RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 USP17L3A6NCW0 530 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 USP17L4A6NCW7 530 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 F8W031 263 aaPredicted RBP15.45■□□□□ 0.06
PTPN1-202ENST00000541713 USP17L1Q7RTZ2 530 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 C8orf37Q96NL8 207 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 CDHR2Q9BYE9 1310 aa15.45■□□□□ 0.06
PTPN1-202ENST00000541713 CAMTA2O94983 1202 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 USP5P45974 858 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 CTCFLQ8NI51 663 aaPredicted RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 WASF1Q92558 559 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 CDC5LQ99459 802 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 ZCCHC17Q9NP64 241 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 TAB2Q9NYJ8 693 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 CGNQ9P2M7 1197 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 HOOK1Q9UJC3 728 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 HPSEQ9Y251 543 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 PPP6R2O75170 966 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 LIFRP42702 1097 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 GYS2P54840 703 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 TBC1D9BQ66K14 1250 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 FBXO3Q9UK99 471 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 LAMA4Q16363 1823 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 MYO5AQ9Y4I1 1855 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 FANCGO15287 622 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 XBP1P17861 261 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 KRT2P35908 639 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 MECOMQ03112 1051 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 RILPL1Q5EBL4 403 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 SGMS1Q86VZ5 419 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 DZIP1Q86YF9 867 aaKnown RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 MED15Q96RN5 788 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 OSBPL5Q9H0X9 879 aaPredicted RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 RNF41Q9H4P4 317 aaPredicted RBP15.44■□□□□ 0.06
PTPN1-202ENST00000541713 PPP2R2CQ9Y2T4 447 aa15.44■□□□□ 0.06
PTPN1-202ENST00000541713 SIPA1L3O60292 1781 aaPredicted RBP15.43■□□□□ 0.06
PTPN1-202ENST00000541713 CCDC196A0A1B0GTZ2 297 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 GNPATO15228 680 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 CBFA2T2O43439 604 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 ABL1P00519 1130 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 PPFIBP1Q86W92 1011 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 STAG2Q8N3U4 1231 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 FAM84BQ96KN1 310 aaPredicted RBP15.43■□□□□ 0.06
PTPN1-202ENST00000541713 MINPP1Q9UNW1 487 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 PTPREP23469 700 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 ETF1P62495 437 aaKnown RBP15.43■□□□□ 0.06
PTPN1-202ENST00000541713 HEATR3Q7Z4Q2 680 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms