RNA–Protein interactions for RNA: ENST00000541562.5

VARS2-211, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2 BASIC

Gene VARS2, Length 3,566 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-211ENST00000541562 USP17L3A6NCW0 530 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 USP17L4A6NCW7 530 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 TRIM28Q13263 835 aaKnown RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 SAMD1Q6SPF0 538 aaPredicted RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 USP17L1Q7RTZ2 530 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 AMIGO3Q86WK7 504 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 SYMPKQ92797 1274 aaKnown RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 TMEM87BQ96K49 555 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 TRPM3Q9HCF6 1732 aaPredicted RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 PDIA4P13667 645 aaKnown RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 SOWAHDA6NJG2 315 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 IL6STP40189 918 aaPredicted RBP17.18■□□□□ 0.34
VARS2-211ENST00000541562 CAVIN4Q5BKX8 364 aa17.18■□□□□ 0.34
VARS2-211ENST00000541562 GNPATO15228 680 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 EIF5P55010 431 aaKnown RBP17.17■□□□□ 0.34
VARS2-211ENST00000541562 PPARDQ03181 441 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 NBPF5PQ86XG9 351 aaPredicted RBP17.17■□□□□ 0.34
VARS2-211ENST00000541562 INTS13Q9NVM9 706 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 KCPQ6ZWJ8 1503 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 ABL1P00519 1130 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 GYS2P54840 703 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 ATP2B2Q01814 1243 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 GRIK5Q16478 980 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 WDR24Q96S15 920 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 KRT23Q9C075 422 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 CRYBG1Q9Y4K1 1723 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 FMNL1O95466 1100 aaPredicted RBP17.17■□□□□ 0.34
VARS2-211ENST00000541562 CLEC10AQ8IUN9 316 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 STAG2Q8N3U4 1231 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 ESR2Q92731 530 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
VARS2-211ENST00000541562 CTNND2Q9UQB3 1225 aa17.17■□□□□ 0.34
VARS2-211ENST00000541562 MROH5Q6ZUA9 1318 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 NRDCO43847 1150 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 CAMTA2O94983 1202 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 FGFR2P21802 821 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 ARID4AP29374 1257 aaPredicted RBP17.16■□□□□ 0.34
VARS2-211ENST00000541562 PTGDRQ13258 359 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 FKBP15Q5T1M5 1219 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 CD44P16070 742 aaKnown RBP17.16■□□□□ 0.34
VARS2-211ENST00000541562 RESP18Q5W5W9 173 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 SARM1Q6SZW1 724 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 CATIPQ7Z7H3 387 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 MAPKAPK5Q8IW41 473 aa17.16■□□□□ 0.34
VARS2-211ENST00000541562 FANCGO15287 622 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 USP5P45974 858 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 ZNF384Q8TF68 577 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 ZCCHC17Q9NP64 241 aaKnown RBP17.15■□□□□ 0.34
VARS2-211ENST00000541562 TRIM75PA6NK02 468 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 MECOMQ03112 1051 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 TAF1P21675 1872 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 SLU7O95391 586 aaKnown RBP17.15■□□□□ 0.34
VARS2-211ENST00000541562 HPS3Q969F9 1004 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 FAM84BQ96KN1 310 aaPredicted RBP17.15■□□□□ 0.34
VARS2-211ENST00000541562 MED15Q96RN5 788 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 TAB2Q9NYJ8 693 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 MINPP1Q9UNW1 487 aa17.15■□□□□ 0.34
VARS2-211ENST00000541562 RRAGBQ5VZM2 374 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 IQCA1Q86XH1 822 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 DZIP1Q86YF9 867 aaKnown RBP17.14■□□□□ 0.33
VARS2-211ENST00000541562 NGLY1Q96IV0 654 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 ZSCAN10Q96SZ4 725 aaPredicted RBP17.14■□□□□ 0.33
VARS2-211ENST00000541562 FBXO2Q9UK22 296 aaPredicted RBP17.14■□□□□ 0.33
VARS2-211ENST00000541562 PAXBP1Q9Y5B6 917 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 SIPA1L3O60292 1781 aaPredicted RBP17.14■□□□□ 0.33
VARS2-211ENST00000541562 IFNAR1P17181 557 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 HEATR3Q7Z4Q2 680 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.14■□□□□ 0.33
VARS2-211ENST00000541562 PLA2G12BQ9BX93 195 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 TRIM49BA6NDI0 452 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 CUTAO60888 179 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 EVCP57679 992 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 SRBD1Q8N5C6 995 aaKnown RBP17.14■□□□□ 0.33
VARS2-211ENST00000541562 LINC00116Q8NCU8 138 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 GJA10Q969M2 543 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 STRCP1A6NGW2 1772 aa17.14■□□□□ 0.33
VARS2-211ENST00000541562 ZSCAN20P17040 1043 aaPredicted RBP17.13■□□□□ 0.33
VARS2-211ENST00000541562 GDAP1L1Q96MZ0 367 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 MKNK2Q9HBH9 465 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 GDAQ9Y2T3 454 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 DEXIO95424 95 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 NTSR2O95665 410 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 MRPS25P82663 173 aaKnown RBP17.13■□□□□ 0.33
VARS2-211ENST00000541562 CCDC12Q8WUD4 166 aaPredicted RBP17.13■□□□□ 0.33
VARS2-211ENST00000541562 TGFBRAP1Q8WUH2 860 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 BAG1Q99933 345 aaPredicted RBP17.13■□□□□ 0.33
VARS2-211ENST00000541562 GSDMDP57764 484 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 TFAP4Q01664 338 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 MRC1P22897 1456 aa17.13■□□□□ 0.33
VARS2-211ENST00000541562 RFX7Q2KHR2 1363 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 GTF2F1P35269 517 aaKnown RBP eCLIP17.12■□□□□ 0.33
VARS2-211ENST00000541562 DPYDQ12882 1025 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 PICALMQ13492 652 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 CTR9Q6PD62 1173 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 NYAP1Q6ZVC0 841 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 CDC5LQ99459 802 aaKnown RBP17.12■□□□□ 0.33
VARS2-211ENST00000541562 ACRBPQ8NEB7 543 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 CTCFLQ8NI51 663 aaPredicted RBP17.12■□□□□ 0.33
VARS2-211ENST00000541562 UBXN4Q92575 508 aa17.12■□□□□ 0.33
VARS2-211ENST00000541562 PLEKHA4Q9H4M7 779 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms