RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 FAM47AQ5JRC9 791 aa20.78■□□□□ 0.92
CLIP1-215ENST00000541108 DGKHQ86XP1 1220 aa20.78■□□□□ 0.92
CLIP1-215ENST00000541108 ZFPM1Q8IX07 1006 aa20.78■□□□□ 0.92
CLIP1-215ENST00000541108 SLC44A5Q8NCS7 719 aa20.78■□□□□ 0.92
CLIP1-215ENST00000541108 NAP1L2Q9ULW6 460 aaPredicted RBP20.78■□□□□ 0.92
CLIP1-215ENST00000541108 GOLGA8BA8MQT2 603 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 ZBTB43O43298 467 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 PPP2R5BQ15173 497 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 FAM83AQ86UY5 434 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 METTL16Q86W50 562 aaKnown RBP20.77■□□□□ 0.92
CLIP1-215ENST00000541108 MICALL2Q8IY33 904 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 FAM151AQ8WW52 585 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 ANKS1AQ92625 1134 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 SENP2Q9HC62 589 aa20.77■□□□□ 0.92
CLIP1-215ENST00000541108 DDTLA6NHG4 134 aaPredicted RBP20.77■□□□□ 0.91
CLIP1-215ENST00000541108 CCT2P78371 535 aaKnown RBP20.77■□□□□ 0.91
CLIP1-215ENST00000541108 IFIT1BQ5T764 474 aaKnown RBP20.77■□□□□ 0.91
CLIP1-215ENST00000541108 NEDD1Q8NHV4 660 aa20.77■□□□□ 0.91
CLIP1-215ENST00000541108 NID2Q14112 1375 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 SOCS7O14512 581 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 GJB2P29033 226 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 HMGN5P82970 282 aaKnown RBP20.76■□□□□ 0.91
CLIP1-215ENST00000541108 RAB3GAP1Q15042 981 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 SH3BP5LQ7L8J4 393 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 ZSCAN29Q8IWY8 852 aaPredicted RBP20.76■□□□□ 0.91
CLIP1-215ENST00000541108 SMARCC2Q8TAQ2 1214 aa20.76■□□□□ 0.91
CLIP1-215ENST00000541108 CLRN2A0PK11 232 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 H7C1D1 291 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 METAP2P50579 478 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLIP1-215ENST00000541108 NBPF9Q3BBW0 867 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 CCDC17Q96LX7 622 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 IL17RBQ9NRM6 502 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 RNF181Q9P0P0 153 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 SRCAPQ6ZRS2 3230 aa20.75■□□□□ 0.91
CLIP1-215ENST00000541108 GRIN3BO60391 1043 aa20.74■□□□□ 0.91
CLIP1-215ENST00000541108 PDCP20941 246 aa20.74■□□□□ 0.91
CLIP1-215ENST00000541108 CRACR2BQ8N4Y2 399 aaPredicted RBP20.74■□□□□ 0.91
CLIP1-215ENST00000541108 NSUN7Q8NE18 718 aaKnown RBP20.74■□□□□ 0.91
CLIP1-215ENST00000541108 GPRC5DQ9NZD1 345 aa20.74■□□□□ 0.91
CLIP1-215ENST00000541108 PLIN4Q96Q06 1357 aa20.74■□□□□ 0.91
CLIP1-215ENST00000541108 CCDC196A0A1B0GTZ2 297 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 SHTN1A0MZ66 631 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 TCP10L2B9ZVM9 353 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CALM1P0DP23 149 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CALM2P0DP24 149 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CALM3P0DP25 149 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 TNFAIP1Q13829 316 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 GPR162Q16538 588 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 RCSD1Q6JBY9 416 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CATIPQ7Z7H3 387 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 ZNF654Q8IZM8 581 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 NCOA5Q9HCD5 579 aaKnown RBP20.73■□□□□ 0.91
CLIP1-215ENST00000541108 HERC5Q9UII4 1024 aaKnown RBP20.73■□□□□ 0.91
CLIP1-215ENST00000541108 KIF3AQ9Y496 699 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 UTRNP46939 3433 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CPLX1O14810 134 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 NMT2O60551 498 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CTDNEP1O95476 244 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 SHMT1P34896 483 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 NOVP48745 357 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 TNNI2P48788 182 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 TATDN1Q6P1N9 297 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CPLX2Q6PUV4 134 aaKnown RBP20.73■□□□□ 0.91
CLIP1-215ENST00000541108 MICU3Q86XE3 530 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 VEZTQ9HBM0 779 aa20.73■□□□□ 0.91
CLIP1-215ENST00000541108 CNTNAP1P78357 1384 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 MYH8P13535 1937 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 CDKL5O76039 1030 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 DDAH1O94760 285 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 C9orf131Q5VYM1 1079 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 SAMD7Q7Z3H4 446 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 FANCBQ8NB91 859 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 CSRNP1Q96S65 589 aa20.72■□□□□ 0.91
CLIP1-215ENST00000541108 SIPA1L1O43166 1804 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 GOLGA8AA7E2F4 631 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 SYT1P21579 422 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 TROAPQ12815 778 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 KIF4BQ2VIQ3 1234 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 RBM26Q5T8P6 1007 aaKnown RBP20.71■□□□□ 0.91
CLIP1-215ENST00000541108 TRIM34Q9BYJ4 488 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 DNAJC18Q9H819 358 aa20.71■□□□□ 0.91
CLIP1-215ENST00000541108 ZC3H4Q9UPT8 1303 aaKnown RBP20.71■□□□□ 0.91
CLIP1-215ENST00000541108 BRD1O95696 1058 aa20.7■□□□□ 0.91
CLIP1-215ENST00000541108 EGFRP00533 1210 aa20.7■□□□□ 0.91
CLIP1-215ENST00000541108 PPP4R3BQ5MIZ7 849 aa20.7■□□□□ 0.91
CLIP1-215ENST00000541108 LARP1BQ659C4 914 aaKnown RBP20.7■□□□□ 0.91
CLIP1-215ENST00000541108 MAP3K14Q99558 947 aa20.7■□□□□ 0.91
CLIP1-215ENST00000541108 FAM217BQ9NTX9 383 aaPredicted RBP20.7■□□□□ 0.91
CLIP1-215ENST00000541108 WDR33Q9C0J8 1336 aaKnown RBP20.7■□□□□ 0.9
CLIP1-215ENST00000541108 PTPDC1A2A3K4 754 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 STX6O43752 255 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 TBC1D12O60347 775 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 JAK2O60674 1132 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 CDC27P30260 824 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 ADD1P35611 737 aaKnown RBP20.7■□□□□ 0.9
CLIP1-215ENST00000541108 PKP1Q13835 747 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 TBC1D10BQ4KMP7 808 aaPredicted RBP20.7■□□□□ 0.9
CLIP1-215ENST00000541108 MYL10Q9BUA6 226 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 KAT14Q9H8E8 782 aa20.7■□□□□ 0.9
CLIP1-215ENST00000541108 RXRAP19793 462 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms